Factsheet for Solyc04g024590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066088	Potato	endoplasmic reticulum, extracellular	56.6	95.24
VIT_04s0023g00860.t01	Wine grape	endoplasmic reticulum, vacuole	73.9	73.9
KRH00954	Soybean	endoplasmic reticulum	72.01	71.79
CDX75819	Canola	cytosol, nucleus, plasma membrane	14.15	68.18
AT3G03330.1	Thale cress	golgi	67.61	65.55
CDY43128	Canola	extracellular, golgi, vacuole	67.3	65.24
Bra031995.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	66.98	64.94
CDY50699	Canola	extracellular, golgi, vacuole	66.35	64.33
TraesCS4B01G084000.1	Wheat	vacuole	64.78	63.0
KRH40271	Soybean	vacuole	61.95	62.74
TraesCS4D01G081900.1	Wheat	vacuole	64.47	62.69
TraesCS4A01G232000.1	Wheat	vacuole	64.15	62.39
KXG28278	Sorghum	endoplasmic reticulum	64.78	62.24
Os11t0265400-01	Rice	plasma membrane	63.84	61.89
CDY50698	Canola	vacuole	57.86	58.6
GSMUA_Achr6P21340_001	Banana	endoplasmic reticulum, vacuole	64.78	57.22
Zm00001d004616_P008	Maize	endoplasmic reticulum, golgi	62.89	56.02
CDY43129	Canola	extracellular, golgi, vacuole	62.58	48.77
HORVU4Hr1G014360.2	Barley	mitochondrion	57.55	47.04
Bra031996.1-P	Field mustard	endoplasmic reticulum, vacuole	52.83	46.93
AT3G03350.2	Thale cress	vacuole	31.45	26.74
Solyc03g097440.2.1	Tomato	plastid	28.93	26.14
Solyc06g072670.2.1	Tomato	endoplasmic reticulum, extracellular, golgi	27.36	24.93
Solyc07g052270.2.1	Tomato	endoplasmic reticulum, vacuole	23.9	21.53
Solyc06g064650.2.1	Tomato	endoplasmic reticulum	20.44	20.19

Protein Annotations

EnsemblPlants:Solyc04g024590.2.1	EnsemblPlantsGene:Solyc04g024590.2	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	InterPro:Sc_DH/Rdtase_CS
PANTHER:PTHR45274	PFAM:PF00106	PRINTS:PR00081	ScanProsite:PS00061	SEG:seg	SUPFAM:SSF51735
TMHMM:TMhelix	UniParc:UPI00027657F8	UniProt:K4BQQ8	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4:+:30010076..30026489

Molecular Weight (calculated)

35193.3 Da

IEP (calculated)

9.791

GRAVY (calculated)

0.065

Length

318 amino acids

Sequence
(BLAST)

001: MMILFLVFLV IFVYFFIKFL TADGDFTLLS KGKVKRAEIE DKVIWITGAS RGIGEILAKQ LASLGAKLII SARNEAELQH VKQQLKGKYA PRDVMVLPLD
101: LTSGEESLRL AVEKAESFFD AAGVDYMIHN AAYERPKSTA LDVTEETLKA MLNVNVVGPI SMTRMLVPYM LKRGRGHLVV MSSAAGKTPA PGQAVYSASK
201: FAVNGYFHSL RSELCRKGIK VTVVCPGPVE TPNPRTGSTE RRVSSERCAE LIIVAASHGI KEAWISYQPV LAVMYLMQYM PSVGYWLMDK IGEKRVEVGA
301: QKGNTYSINL LFDKKKES

Best Arabidopsis Sequence Match ( AT3G03330.1 )
(BLAST)

001: MLTLLFFSLG ALLLIVLLFK FAFADGDFTL ISKKHVKREA IQGKVVWITG ASRGIGEILA KQFASLDAKL ILSARNKAEL DRVKSELKGK FAPEDVKVLP
101: LDLASGEESL KHVVEQAVSL FPGAGVDYLV HNAAFERPKS KASDASEETL KTTFDVNVFG TISLTKLVAP HMLKQGGGHF VVISSAAGKV PSPGQAIYSA
201: SKHALHGYFH SLRSEFCQKG IKVTVVCPGP IETWNGTGTS TSEDSKSPEK RVSSERCAEL TIIAASHNLK EAWISYQPVL LVMYLVQYMP SLGFWLMDKV
301: GGKRVEVAEK KGNTYSWDLL FGKKTKTN

Arabidopsis Description

At3g03330/T21P5_25 [Source:UniProtKB/TrEMBL;Acc:Q8L7U0]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.