Factsheet for Solyc06g072670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069254	Potato	endoplasmic reticulum, extracellular, golgi	98.85	98.85
Solyc03g097440.2.1	Tomato	plastid	71.06	70.45
Bra000626.1-P	Field mustard	endoplasmic reticulum, extracellular	63.32	64.81
CDY34029	Canola	cytosol	63.04	64.52
Bra022523.1-P	Field mustard	endoplasmic reticulum, extracellular	64.47	64.47
CDY16353	Canola	cytosol	64.47	64.47
CDY68167	Canola	cytosol	63.9	63.9
AT5G50700.1	Thale cress	endoplasmic reticulum	63.32	63.32
AT5G50600.1	Thale cress	endoplasmic reticulum	63.32	63.32
CDX83157	Canola	cytosol	53.3	59.81
VIT_17s0000g01050.t01	Wine grape	golgi, vacuole	52.72	57.14
KRH59797	Soybean	endoplasmic reticulum, extracellular, plasma membrane	32.09	54.9
TraesCS2B01G302200.1	Wheat	plasma membrane, vacuole	36.96	52.02
Solyc07g052270.2.1	Tomato	endoplasmic reticulum, vacuole	51.58	50.99
Zm00001d003938_P001	Maize	golgi, vacuole	49.0	48.86
OQU81408	Sorghum	extracellular, golgi, vacuole	48.42	48.15
TraesCS2D01G284000.2	Wheat	plasma membrane, vacuole	47.28	47.01
HORVU2Hr1G070360.1	Barley	plasma membrane	48.42	46.05
Solyc06g064650.2.1	Tomato	endoplasmic reticulum	40.11	43.48
Os04t0390800-01	Rice	plastid	43.27	41.83
TraesCS2A01G285100.1	Wheat	mitochondrion	46.7	40.15
Solyc04g024590.2.1	Tomato	endoplasmic reticulum	24.93	27.36

Protein Annotations

Gene3D:3.40.50.720	MapMan:5.9.4	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	UniProt:K4C8Y7
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43391
PANTHER:PTHR43391:SF10	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	EnsemblPlantsGene:Solyc06g072670.2	EnsemblPlants:Solyc06g072670.2.1
TMHMM:TMhelix	UniParc:UPI00027659AD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:44815712..44818045

Molecular Weight (calculated)

38683.5 Da

IEP (calculated)

5.742

GRAVY (calculated)

0.095

Length

349 amino acids

Sequence
(BLAST)

001: MLVELIHKFL NLVAPPVSFF SLLLFLPPFQ FFKCVLSILG TLFSEDVAGK VVIITGASSG IGEYLAYEYA KRGACLTLAA RRDRSLNEVA EGARELGSPD
101: VITIQADVSK AEDCRRIVDQ TMSHFGRLDH LVNNAGVHAI ALFEDTEDVT DFKSVMDINF WGSVYMTRFA IPYLRYSGGR IIVLSSSASW LPAPRSSFYN
201: ASKAAVSQFF ETLRIELGQD IKITLVTPGF VESELTQGKY IGKGGDVEVD QGMRDVFIGA TPVAKVESCA KTIVNSACRG ERYVTIPSWF RVSYLWKVFA
301: PEVLEWMYRL MHLTGTSPED ALSKKVADYT GAQNVLYPET IRTGETKTD

Best Arabidopsis Sequence Match ( AT5G50600.1 )
(BLAST)

001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD

Arabidopsis Description

HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.