Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- peroxisome 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G302200.1 | Wheat | plasma membrane, vacuole | 64.85 | 95.97 |
| TraesCS2D01G284000.2 | Wheat | plasma membrane, vacuole | 91.28 | 95.44 |
| TraesCS2A01G285100.1 | Wheat | mitochondrion | 93.46 | 84.48 |
| OQU81408 | Sorghum | extracellular, golgi, vacuole | 75.2 | 78.63 |
| Zm00001d003938_P001 | Maize | golgi, vacuole | 73.57 | 77.14 |
| Os04t0390800-01 | Rice | plastid | 65.94 | 67.04 |
| PGSC0003DMT400028017 | Potato | cytosol | 13.35 | 57.65 |
| CDY16353 | Canola | cytosol | 47.68 | 50.14 |
| Bra022523.1-P | Field mustard | endoplasmic reticulum, extracellular | 47.41 | 49.86 |
| CDY68167 | Canola | cytosol | 47.14 | 49.57 |
| AT5G50600.1 | Thale cress | endoplasmic reticulum | 46.87 | 49.28 |
| AT5G50700.1 | Thale cress | endoplasmic reticulum | 46.87 | 49.28 |
| PGSC0003DMT400069254 | Potato | endoplasmic reticulum, extracellular, golgi | 46.32 | 48.71 |
| Solyc06g072670.2.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 46.05 | 48.42 |
| CDY34029 | Canola | cytosol | 44.69 | 48.09 |
| Bra000626.1-P | Field mustard | endoplasmic reticulum, extracellular | 44.41 | 47.8 |
| PGSC0003DMT400092688 | Potato | endoplasmic reticulum | 43.32 | 47.75 |
| CDX83013 | Canola | endoplasmic reticulum | 16.89 | 47.33 |
| PGSC0003DMT400068094 | Potato | extracellular, plasma membrane, vacuole | 43.32 | 47.04 |
| KRH59794 | Soybean | extracellular, plasma membrane | 14.17 | 46.43 |
| Solyc03g097440.2.1 | Tomato | plastid | 44.41 | 46.31 |
| CDY05818 | Canola | endoplasmic reticulum, extracellular | 19.62 | 46.15 |
| CDX83157 | Canola | cytosol | 38.69 | 45.66 |
| PGSC0003DMT400074514 | Potato | endoplasmic reticulum, golgi | 43.6 | 45.33 |
| Solyc07g052270.2.1 | Tomato | endoplasmic reticulum, vacuole | 43.6 | 45.33 |
| VIT_01s0146g00070.t01 | Wine grape | cytosol | 34.33 | 45.16 |
| CDY16351 | Canola | plasma membrane | 37.87 | 44.69 |
| Bra022525.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 37.87 | 44.69 |
| CDX91557 | Canola | plasma membrane | 34.6 | 44.41 |
| AT5G50770.1 | Thale cress | endoplasmic reticulum | 40.87 | 43.86 |
| CDX71662 | Canola | plasma membrane, vacuole | 35.69 | 43.81 |
| AT3G47360.1 | Thale cress | endoplasmic reticulum | 36.51 | 43.37 |
| AT5G50690.1 | Thale cress | extracellular, plasma membrane | 34.88 | 42.81 |
| AT5G50590.1 | Thale cress | extracellular, plasma membrane | 34.88 | 42.81 |
| Bra041076.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 34.6 | 42.47 |
| KRH59795 | Soybean | extracellular | 37.33 | 42.41 |
| VIT_01s0146g00090.t01 | Wine grape | golgi | 38.15 | 42.3 |
| CDY21787 | Canola | endoplasmic reticulum, golgi | 35.69 | 42.26 |
| CDY09733 | Canola | endoplasmic reticulum, golgi | 35.42 | 42.07 |
| CDX90560 | Canola | endoplasmic reticulum | 35.15 | 41.75 |
| KRH59797 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 23.16 | 41.67 |
| HORVU2Hr1G070310.3 | Barley | plastid | 41.96 | 41.62 |
| Bra012757.1-P | Field mustard | extracellular, golgi | 34.88 | 41.42 |
| KRH41112 | Soybean | endoplasmic reticulum, golgi | 41.69 | 40.58 |
| VIT_16s0039g01600.t01 | Wine grape | extracellular, nucleus, peroxisome, plastid | 12.81 | 40.17 |
| Bra033794.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 30.25 | 39.36 |
| AT3G47350.2 | Thale cress | endoplasmic reticulum | 32.7 | 37.38 |
| HORVU5Hr1G013510.1 | Barley | golgi | 40.87 | 37.04 |
| PGSC0003DMT400028018 | Potato | plastid | 17.44 | 36.78 |
| CDX83014 | Canola | mitochondrion | 19.62 | 35.64 |
| CDX94277 | Canola | mitochondrion | 8.72 | 34.41 |
| HORVU5Hr1G120110.2 | Barley | endoplasmic reticulum, vacuole | 34.88 | 33.95 |
| HORVU4Hr1G014360.2 | Barley | mitochondrion | 19.35 | 18.25 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:5.9.4 | EMBL:AK372543 | UniProt:F2E8R9 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 |
| GO:GO:0055114 | EnsemblPlantsGene:HORVU2Hr1G070360 | EnsemblPlants:HORVU2Hr1G070360.1 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF00106 | PRINTS:PR00080 |
| PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR43391 | PANTHER:PTHR43391:SF28 | InterPro:SDR_fam | SUPFAM:SSF51735 |
| InterPro:Sc_DH/Rdtase_CS | TMHMM:TMhelix | UniParc:UPI0002008875 | SEG:seg | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E8R9]
Coordinates
chrchr2H:+:496740320..496742105
Molecular Weight (calculated)
40950.5 Da
IEP (calculated)
8.647
GRAVY (calculated)
-0.023
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRSTHCNQV LSARTPMTML MGRLAGVALE LALAALLLLF LPPYYVYKLT ASFLGSVFPD NVSGKVVLIT GASSGIGEHL AYEYAKRGAN LALVARREAS
101: LREVADNASA LGSPNVLVLP ADVSKPDDCR KFMDDTVAYF GRLDHLVNNA SIWQVCKFEE VEDVHYFRTV MDINFWGHVY PTRYAIPHLK KTHGRIVGVT
201: SNSSYIFIGR NTFYNASKAA ALNFYDTLRM ELGGDVHITE IVPGVVESEI TKGKMLTKEG EMKVDQDERD AIHGPTPAEP VAAFAKTVVR DVCRGERYVF
301: EPRWYMAVYL FRVCFPEILS WSSRLLTVKT LGRPATTDTV GRQILDMPGV RWFTQTASLR SPEIRAR
101: LREVADNASA LGSPNVLVLP ADVSKPDDCR KFMDDTVAYF GRLDHLVNNA SIWQVCKFEE VEDVHYFRTV MDINFWGHVY PTRYAIPHLK KTHGRIVGVT
201: SNSSYIFIGR NTFYNASKAA ALNFYDTLRM ELGGDVHITE IVPGVVESEI TKGKMLTKEG EMKVDQDERD AIHGPTPAEP VAAFAKTVVR DVCRGERYVF
301: EPRWYMAVYL FRVCFPEILS WSSRLLTVKT LGRPATTDTV GRQILDMPGV RWFTQTASLR SPEIRAR
001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
Arabidopsis Description
HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.