Factsheet for Bra022523.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16353	Canola	cytosol	99.71	99.71
Bra000626.1-P	Field mustard	endoplasmic reticulum, extracellular	86.82	88.86
AT5G50700.1	Thale cress	endoplasmic reticulum	88.25	88.25
AT5G50600.1	Thale cress	endoplasmic reticulum	88.25	88.25
Solyc06g072670.2.1	Tomato	endoplasmic reticulum, extracellular, golgi	64.47	64.47
PGSC0003DMT400069254	Potato	endoplasmic reticulum, extracellular, golgi	63.9	63.9
PGSC0003DMT400092688	Potato	endoplasmic reticulum	57.31	60.06
Solyc03g097440.2.1	Tomato	plastid	59.89	59.38
PGSC0003DMT400068094	Potato	extracellular, plasma membrane, vacuole	57.31	59.17
KRH59797	Soybean	endoplasmic reticulum, extracellular, plasma membrane	33.81	57.84
VIT_17s0000g01050.t01	Wine grape	golgi, vacuole	53.3	57.76
TraesCS2B01G302200.1	Wheat	plasma membrane, vacuole	36.39	51.21
TraesCS2D01G284000.2	Wheat	plasma membrane, vacuole	48.71	48.43
Bra012757.1-P	Field mustard	extracellular, golgi	42.69	48.22
Bra041076.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	41.26	48.16
Bra022525.1-P	Field mustard	endoplasmic reticulum, plasma membrane	42.41	47.59
HORVU2Hr1G070360.1	Barley	plasma membrane	49.86	47.41
Zm00001d003938_P001	Maize	golgi, vacuole	47.28	47.14
OQU81408	Sorghum	extracellular, golgi, vacuole	46.99	46.72
Bra033794.1-P	Field mustard	endoplasmic reticulum, plasma membrane	36.1	44.68
Os04t0390800-01	Rice	plastid	43.84	42.38
TraesCS2A01G285100.1	Wheat	mitochondrion	47.85	41.13
Bra000697.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	40.11	31.32
Bra031995.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	24.07	25.61
Bra031996.1-P	Field mustard	endoplasmic reticulum, vacuole	19.48	18.99

Protein Annotations

Gene3D:3.40.50.720	MapMan:5.9.4	EnsemblPlantsGene:Bra022523	EnsemblPlants:Bra022523.1	EnsemblPlants:Bra022523.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0055114	UniProt:M4E175	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080
PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43391	PANTHER:PTHR43391:SF10	InterPro:SDR_fam	SMART:SM00822
SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI0002545585	SEG:seg	:

Description

AT5G50600 (E=2e-167) AtHSD1 | AtHSD1 (hydroxysteroid dehydrogenase 1); binding / catalytic/ oxidoreductase

Coordinates

chrA02:+:9252853..9254527

Molecular Weight (calculated)

39044.0 Da

IEP (calculated)

6.368

GRAVY (calculated)

0.052

Length

349 amino acids

Sequence
(BLAST)

001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFVQSIFSTI FSENVYGKVV LITGASSGIG EQLAYEYASK GACLALTARR KNRLEEVAEI AREVGSPNVV
101: TVHADVSKPD DCRRIVDETI SHFGRLDHLV NNAGIMQISM FENIEEITRT RAVMDTNFWG AVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLNFFET LRIELGSDVH ITIVTPGYIE SELTQGKYVS GEGELVVNQD IRDVQIGAFP VTSVSGCAKG IVKGVCRKER YVTEPSWFKV TYLWKVFCPE
301: LIEWGCRLMF LSGHGTPEEN ALNKKILDIP GVRSALYPEP IRTPEIKSE

Best Arabidopsis Sequence Match ( AT5G50600.1 )
(BLAST)

001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD

Arabidopsis Description

HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.