Factsheet for VIT_17s0000g01050.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g01030.t01	Wine grape	endoplasmic reticulum, extracellular	9.32	61.22
Bra022523.1-P	Field mustard	endoplasmic reticulum, extracellular	57.76	53.3
CDY16353	Canola	cytosol	57.76	53.3
PGSC0003DMT400092688	Potato	endoplasmic reticulum	54.97	53.15
AT5G50700.1	Thale cress	endoplasmic reticulum	57.45	53.01
CDY68167	Canola	cytosol	57.45	53.01
AT5G50600.1	Thale cress	endoplasmic reticulum	57.45	53.01
Solyc06g072670.2.1	Tomato	endoplasmic reticulum, extracellular, golgi	57.14	52.72
PGSC0003DMT400068094	Potato	extracellular, plasma membrane, vacuole	55.28	52.66
PGSC0003DMT400069254	Potato	endoplasmic reticulum, extracellular, golgi	56.83	52.44
CDY34029	Canola	cytosol	55.28	52.2
Bra000626.1-P	Field mustard	endoplasmic reticulum, extracellular	55.28	52.2
Solyc03g097440.2.1	Tomato	plastid	56.52	51.7
KRH59797	Soybean	endoplasmic reticulum, extracellular, plasma membrane	32.3	50.98
CDX83157	Canola	cytosol	48.14	49.84
VIT_16s0039g01600.t01	Wine grape	extracellular, nucleus, peroxisome, plastid	17.39	47.86
VIT_01s0146g00070.t01	Wine grape	cytosol	37.27	43.01
VIT_01s0146g00090.t01	Wine grape	golgi	41.61	40.48
VIT_17s0000g01040.t01	Wine grape	endoplasmic reticulum	18.94	37.65
VIT_18s0001g06750.t01	Wine grape	endoplasmic reticulum	40.68	37.01
VIT_04s0023g00860.t01	Wine grape	endoplasmic reticulum, vacuole	20.19	20.44

Protein Annotations

Gene3D:3.40.50.720	MapMan:5.9.4	ProteinID:CBI15698	ProteinID:CBI15698.3	UniProt:D7SH18	EMBL:FN594950
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080
PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43391	PANTHER:PTHR43391:SF10	InterPro:SDR_fam	SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI0001BE0F24	ArrayExpress:VIT_17s0000g01050	EnsemblPlantsGene:VIT_17s0000g01050	EnsemblPlants:VIT_17s0000g01050.t01
unigene:Vvi.12290	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:-:746760..749039

Molecular Weight (calculated)

35867.2 Da

IEP (calculated)

6.253

GRAVY (calculated)

0.078

Length

322 amino acids

Sequence
(BLAST)

001: MDIIHSFLNL VAPPFTFVAL FLLLPPFHFF KFFLSTFWSI LSENVTGKRL SSSPALPPAS GSMWPRALGA PDVRVVPADV SKLEDCKRIV DEAANHFGRV
101: DHLVNNAGIQ SASTLEEATD ITNFRPVMDV NFWGSVYTTR FAIPHLRNSH GKIIGMASSA AWLPMPRMSI YNASKAALIS FYDTLRIELG SDIGGITVVT
201: PGFIESEMTQ GEFLKNEDQI EVDQDMRDAQ VSIIPVGRAE ACAKAIVKSA CRGEKYLTEP SWFRVTYLWK VLCPEVIEWC FRLFYLARPG ESETLSKKIL
301: DISGARGFLY PTTIQTTDVK AD

Best Arabidopsis Sequence Match ( AT5G50600.1 )
(BLAST)

001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD

Arabidopsis Description

HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.