Factsheet for Bra000626.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83157	Canola	cytosol	82.99	91.0
Bra022523.1-P	Field mustard	endoplasmic reticulum, extracellular	88.86	86.82
AT5G50700.1	Thale cress	endoplasmic reticulum	86.51	84.53
AT5G50600.1	Thale cress	endoplasmic reticulum	86.51	84.53
Solyc06g072670.2.1	Tomato	endoplasmic reticulum, extracellular, golgi	64.81	63.32
PGSC0003DMT400069254	Potato	endoplasmic reticulum, extracellular, golgi	64.22	62.75
PGSC0003DMT400092688	Potato	endoplasmic reticulum	58.65	60.06
Solyc03g097440.2.1	Tomato	plastid	60.12	58.24
PGSC0003DMT400068094	Potato	extracellular, plasma membrane, vacuole	57.18	57.69
KRH59797	Soybean	endoplasmic reticulum, extracellular, plasma membrane	33.14	55.39
VIT_17s0000g01050.t01	Wine grape	golgi, vacuole	52.2	55.28
TraesCS2B01G302200.1	Wheat	plasma membrane, vacuole	35.48	48.79
Bra041076.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	41.35	47.16
Bra012757.1-P	Field mustard	extracellular, golgi	42.52	46.93
Bra022525.1-P	Field mustard	endoplasmic reticulum, plasma membrane	42.52	46.62
TraesCS2D01G284000.2	Wheat	plasma membrane, vacuole	46.33	45.01
HORVU2Hr1G070360.1	Barley	plasma membrane	47.8	44.41
OQU81408	Sorghum	extracellular, golgi, vacuole	45.45	44.16
Zm00001d003938_P001	Maize	golgi, vacuole	44.57	43.43
Bra033794.1-P	Field mustard	endoplasmic reticulum, plasma membrane	35.78	43.26
Os04t0390800-01	Rice	plastid	41.94	39.61
TraesCS2A01G285100.1	Wheat	mitochondrion	46.04	38.67
Bra000697.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	40.47	30.87
Bra031995.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	23.46	24.39
Bra031996.1-P	Field mustard	endoplasmic reticulum, vacuole	19.35	18.44

Protein Annotations

Gene3D:3.40.50.720	MapMan:5.9.4	EnsemblPlantsGene:Bra000626	EnsemblPlants:Bra000626.1	EnsemblPlants:Bra000626.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0055114	UniProt:M4C8U8	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080
PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43391	PANTHER:PTHR43391:SF10	InterPro:SDR_fam	SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI0002540202	SEG:seg	:	:

Description

AT5G50600 (E=7e-156) AtHSD1 | AtHSD1 (hydroxysteroid dehydrogenase 1); binding / catalytic/ oxidoreductase

Coordinates

chrA03:+:12126586..12128163

Molecular Weight (calculated)

38285.2 Da

IEP (calculated)

6.886

GRAVY (calculated)

0.119

Length

341 amino acids

Sequence
(BLAST)

001: MELINDFLNL TAPFFTFFGL CFFLPPFIFF KFLQSIFSTI FCENLNGKVV LITGASSGIG ERLAYEYASK GACLALTALR KNRLEEVAEI AREVGSPNVV
101: TVHADVSKPD DCRRIVDETI SHFGRLDHLV NNAGITKISM FENFEEITRT RSVMDTNFWG SVYTTRAALP YLRQSNGKIV VMSSSAAWLT APRMSFYNAS
201: KAALLNFFET LRIELGGDVH ITIVTPGYTQ FELAQGKYFS AEGELVVDQN VRDVQVGAFP VASVSACAKE IVNGVCRKQR YVTEPSWFKV TYLWKVFCPE
301: LIEWGCRLLF MTTSEENALN KKILDNTGVR GVLYPEPIRT L

Best Arabidopsis Sequence Match ( AT5G50600.1 )
(BLAST)

001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD

Arabidopsis Description

HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.