Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 7
- golgi 5
- extracellular 5
- plastid 1
- vacuole 4
- plasma membrane 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G50700.1 | Thale cress | endoplasmic reticulum | 100.0 | 100.0 |
| CDY68167 | Canola | cytosol | 89.97 | 89.97 |
| CDY16353 | Canola | cytosol | 88.54 | 88.54 |
| Bra022523.1-P | Field mustard | endoplasmic reticulum, extracellular | 88.25 | 88.25 |
| CDY34029 | Canola | cytosol | 85.39 | 87.39 |
| Bra000626.1-P | Field mustard | endoplasmic reticulum, extracellular | 84.53 | 86.51 |
| CDX83157 | Canola | cytosol | 69.34 | 77.81 |
| Solyc06g072670.2.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 63.32 | 63.32 |
| PGSC0003DMT400069254 | Potato | endoplasmic reticulum, extracellular, golgi | 62.75 | 62.75 |
| PGSC0003DMT400092688 | Potato | endoplasmic reticulum | 56.16 | 58.86 |
| Solyc03g097440.2.1 | Tomato | plastid | 59.03 | 58.52 |
| PGSC0003DMT400068094 | Potato | extracellular, plasma membrane, vacuole | 56.45 | 58.28 |
| VIT_17s0000g01050.t01 | Wine grape | golgi, vacuole | 53.01 | 57.45 |
| KRH59797 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 33.24 | 56.86 |
| TraesCS2B01G302200.1 | Wheat | plasma membrane, vacuole | 36.1 | 50.81 |
| AT5G50690.1 | Thale cress | extracellular, plasma membrane | 41.26 | 48.16 |
| AT5G50590.1 | Thale cress | extracellular, plasma membrane | 41.26 | 48.16 |
| TraesCS2D01G284000.2 | Wheat | plasma membrane, vacuole | 47.85 | 47.58 |
| Zm00001d003938_P001 | Maize | golgi, vacuole | 47.56 | 47.43 |
| OQU81408 | Sorghum | extracellular, golgi, vacuole | 47.56 | 47.29 |
| AT3G47360.1 | Thale cress | endoplasmic reticulum | 41.55 | 46.93 |
| HORVU2Hr1G070360.1 | Barley | plasma membrane | 49.28 | 46.87 |
| AT5G50770.1 | Thale cress | endoplasmic reticulum | 44.41 | 45.32 |
| Os04t0390800-01 | Rice | plastid | 43.55 | 42.11 |
| AT3G47350.2 | Thale cress | endoplasmic reticulum | 37.82 | 41.12 |
| TraesCS2A01G285100.1 | Wheat | mitochondrion | 47.56 | 40.89 |
| AT4G10020.1 | Thale cress | endoplasmic reticulum | 42.12 | 37.79 |
| AT3G03330.1 | Thale cress | golgi | 24.07 | 25.61 |
| AT3G03350.2 | Thale cress | vacuole | 12.89 | 12.03 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:5.9.4 | EntrezGene:835129 | EntrezGene:835141 | UniProt:A0A178US17 | ProteinID:AED95967.1 |
| ProteinID:AED95981.1 | EMBL:AF446888 | EMBL:AK221698 | ArrayExpress:AT5G50600 | EnsemblPlantsGene:AT5G50600 | RefSeq:AT5G50600 |
| TAIR:AT5G50600 | RefSeq:AT5G50600-TAIR-G | EnsemblPlants:AT5G50600.1 | TAIR:AT5G50600.1 | Symbol:ATHSD1 | EMBL:AY052660 |
| EMBL:AY062768 | EMBL:AY081653 | ProteinID:BAA96983.1 | ProteinID:BAB09145.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005811 | GO:GO:0006629 | GO:GO:0006694 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 |
| GO:GO:0055114 | GO:GO:0070524 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_568742.1 | RefSeq:NP_680418.1 | ProteinID:OAO96425.1 |
| UniProt:P0DKC5 | UniProt:P0DKC6 | PFAM:PF00106 | PO:PO:0000034 | PO:PO:0009001 | PO:PO:0009005 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009032 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020144 |
| PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR43391 | PANTHER:PTHR43391:SF10 | InterPro:SDR_fam |
| SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | TMHMM:TMhelix | UniParc:UPI0000048C40 | SEG:seg | : |
Description
HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
Coordinates
chr5:-:20589702..20591937
Molecular Weight (calculated)
39089.1 Da
IEP (calculated)
6.152
GRAVY (calculated)
0.028
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.