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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 6
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
 cytosol: 16847873
cytosol: 19562800
cytosol: 21803444
msms PMID: 21803444 doi
P Jolivet, C Boulard, A Bellamy, B Valot, S d'Andréa, M Zivy, N Nesi, T Chardot
INRA, AgroParisTech, Institut Jean-Pierre Bourgin, UMR 1318, F-78000 Versailles, France. Pascale.Jolivet@versailles.inra.fr
msms PMID: 19562800 doi
P Jolivet, C Boulard, A Bellamy, C Larré, M Barre, H Rogniaux, S d'Andréa, T Chardot, N Nesi
NRA, UMR 206, Chimie Biologique, Thiverval-Grignon, France. jolivet@grignon.inra.fr
msms PMID: 16847873 doi
V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen
University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY16353 Canola cytosol 97.99 97.99
CDY34029 Canola cytosol 88.54 90.62
AT5G50700.1 Thale cress endoplasmic reticulum 89.97 89.97
AT5G50600.1 Thale cress endoplasmic reticulum 89.97 89.97
CDX83157 Canola cytosol 73.35 82.32
Solyc06g072670.2.1 Tomato endoplasmic reticulum, extracellular, golgi 63.9 63.9
PGSC0003DMT400069254 Potato endoplasmic reticulum, extracellular, golgi 63.32 63.32
PGSC0003DMT400092688 Potato endoplasmic reticulum 57.31 60.06
PGSC0003DMT400068094 Potato extracellular, plasma membrane, vacuole 57.31 59.17
Solyc03g097440.2.1 Tomato plastid 59.6 59.09
VIT_17s0000g01050.t01 Wine grape golgi, vacuole 53.01 57.45
KRH59797 Soybean endoplasmic reticulum, extracellular, plasma membrane 33.24 56.86
TraesCS2B01G302200.1 Wheat plasma membrane, vacuole 36.1 50.81
CDY05818 Canola endoplasmic reticulum, extracellular 22.35 50.0
CDY16351 Canola plasma membrane 42.98 48.23
TraesCS2D01G284000.2 Wheat plasma membrane, vacuole 48.42 48.15
CDX71662 Canola plasma membrane, vacuole 40.97 47.83
Zm00001d003938_P001 Maize golgi, vacuole 47.85 47.71
CDY09733 Canola endoplasmic reticulum, golgi 42.12 47.57
OQU81408 Sorghum extracellular, golgi, vacuole 47.56 47.29
CDX90560 Canola endoplasmic reticulum 41.83 47.25
HORVU2Hr1G070360.1 Barley plasma membrane 49.57 47.14
CDY21787 Canola endoplasmic reticulum, golgi 41.83 47.1
CDX91557 Canola plasma membrane 38.4 46.85
CDX83013 Canola endoplasmic reticulum 16.91 45.04
CDX83014 Canola mitochondrion 24.93 43.07
Os04t0390800-01 Rice plastid 44.13 42.66
TraesCS2A01G285100.1 Wheat mitochondrion 48.14 41.38
CDX90742 Canola cytosol 40.4 31.26
CDY05081 Canola cytosol 40.4 30.92
CDX94277 Canola mitochondrion 8.02 30.11
CDY50699 Canola extracellular, golgi, vacuole 23.21 24.7
CDY43128 Canola extracellular, golgi, vacuole 23.21 24.7
CDY50698 Canola vacuole 20.92 23.25
CDY43129 Canola extracellular, golgi, vacuole 23.21 19.85
CDX75819 Canola cytosol, nucleus, plasma membrane 3.15 16.67
Protein Annotations
Gene3D:3.40.50.720MapMan:5.9.4unigene:Bna.2775GO:C3S7G8UniProt:C3S7G8EnsemblPlants:CDY68167
ProteinID:CDY68167ProteinID:CDY68167.1GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0008150
GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016491GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00070002001
InterPro:NAD(P)-bd_dom_sfPFAM:PF00106PRINTS:PR00080PRINTS:PR00081ScanProsite:PS00061PANTHER:PTHR43391
PANTHER:PTHR43391:SF10InterPro:SDR_famSUPFAM:SSF51735InterPro:Sc_DH/Rdtase_CSTMHMM:TMhelixUniParc:UPI00019DBBC5
SEG:seg:::::
Description
BnaCnng57830DBnaCnng57830D protein [Source:UniProtKB/TrEMBL;Acc:C3S7G8]
Coordinates
chrLK036925:-:2105..4162
Molecular Weight (calculated)
39117.0 Da
IEP (calculated)
6.666
GRAVY (calculated)
0.046
Length
349 amino acids
Sequence
(BLAST)
001: MELINDFFNL TAPFFTFFGL CFFLPPFYFF KFVQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYASK GACLALTARR KNRLEEVAEI AREVGSPNVV
101: TVHADVSKPD DCRRIVDETI SHFGRLDHLV NNAGIMQISM FENIEEITRT RAVMDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLNFFET LRIELGSDVH ITIVTPGYIE SELTQGKYFS GEGELVVNQD IRDVQIGAFP VTSVSGCAKG IVKGVCRKQR YVTEPSWFKV TYLWKVFCPE
301: LIEWGCRLLF LSGHGTSEEN ALNKKILDIP GVRSALYPES IRTPEIKSE
Best Arabidopsis Sequence Match ( AT5G50600.1 )
(BLAST)
001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
Arabidopsis Description
HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.