Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033794.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 96.95 | 45.04 |
| CDY05818 | Canola | endoplasmic reticulum, extracellular | 51.15 | 42.95 |
| CDX94277 | Canola | mitochondrion | 22.14 | 31.18 |
| CDY21787 | Canola | endoplasmic reticulum, golgi | 70.99 | 30.0 |
| CDX90560 | Canola | endoplasmic reticulum | 70.23 | 29.77 |
| CDY09733 | Canola | endoplasmic reticulum, golgi | 70.23 | 29.77 |
| TraesCS2B01G302200.1 | Wheat | plasma membrane, vacuole | 46.56 | 24.6 |
| CDX71662 | Canola | plasma membrane, vacuole | 51.15 | 22.41 |
| KRH59795 | Soybean | extracellular | 51.91 | 21.05 |
| CDX91557 | Canola | plasma membrane | 45.04 | 20.63 |
| CDY16351 | Canola | plasma membrane | 46.56 | 19.61 |
| Solyc07g052270.2.1 | Tomato | endoplasmic reticulum, vacuole | 51.15 | 18.98 |
| Zm00001d003938_P001 | Maize | golgi, vacuole | 48.09 | 18.0 |
| OQU81408 | Sorghum | extracellular, golgi, vacuole | 47.33 | 17.66 |
| CDY16353 | Canola | cytosol | 46.56 | 17.48 |
| TraesCS2D01G284000.2 | Wheat | plasma membrane, vacuole | 45.8 | 17.09 |
| CDY34029 | Canola | cytosol | 44.27 | 17.01 |
| CDY68167 | Canola | cytosol | 45.04 | 16.91 |
| HORVU2Hr1G070360.1 | Barley | plasma membrane | 47.33 | 16.89 |
| TraesCS2A01G285100.1 | Wheat | mitochondrion | 46.56 | 15.02 |
| Os04t0390800-01 | Rice | plastid | 38.17 | 13.85 |
| CDX83157 | Canola | cytosol | 29.01 | 12.22 |
| CDX90742 | Canola | cytosol | 40.46 | 11.75 |
| CDY05081 | Canola | cytosol | 40.46 | 11.62 |
| CDY43128 | Canola | extracellular, golgi, vacuole | 28.24 | 11.28 |
| CDY50699 | Canola | extracellular, golgi, vacuole | 27.48 | 10.98 |
| CDY50698 | Canola | vacuole | 19.85 | 8.28 |
| CDY43129 | Canola | extracellular, golgi, vacuole | 21.37 | 6.86 |
| CDX83014 | Canola | mitochondrion | 4.58 | 2.97 |
| CDX75819 | Canola | cytosol, nucleus, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX83013 | EnsemblPlantsGene:GSBRNA2T00138465001 | Gene3D:3.40.50.720 | GO:A0A078D729 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam |
| PANTHER:PTHR43391 | PANTHER:PTHR43391:SF10 | PFAM:PF00106 | ProteinID:CDX83013 | ProteinID:CDX83013.1 | SUPFAM:SSF51735 |
| TMHMM:TMhelix | UniParc:UPI0004EE8154 | MapMan:35.1 | : | : | : |
Description
BnaA01g20130D
Coordinates
chrLK031831:+:473302..477282
Molecular Weight (calculated)
14844.2 Da
IEP (calculated)
6.098
GRAVY (calculated)
0.329
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MDILHTSLDV LLPLVSIIFF FLFYPFYVLI KLVMFLYKQF LFENVAGKVV LITGASSGIG EHLAYEYAKK GAYLALVARR EDRLDIVAET SRQLGSGDVI
101: IIPGDVAEVE DCKEFIDETI RHFGKRKHSN N
101: IIPGDVAEVE DCKEFIDETI RHFGKRKHSN N
001: MDMLHTILNF LLPPLTISFL VLFYPFYLFT KLMSCLKHLH FENVTGKVVL ITGASSGIGE HVAYEYAKKG AKLALVARRK DRLEIVAETS RQLGSGDVII
101: IPGDVSNVED CKKFIDETIH HFGKLDHLIN NAGVPQTVIF EDFTQIQDAN SIMDINFWGS TYITYFAIPH LRKSKGKIVV ISSATAIIPL QAASVYSASK
201: AALVKFFETL RVEISPDIKI TIALPGFIST DMTTPQFKEM YGSDFILSES VSRCAKAIFR GIGRGEAYVI EPSWIKWIFL IKNVCPEIVD YLLDYIFVSY
301: LKPYFKRD
101: IPGDVSNVED CKKFIDETIH HFGKLDHLIN NAGVPQTVIF EDFTQIQDAN SIMDINFWGS TYITYFAIPH LRKSKGKIVV ISSATAIIPL QAASVYSASK
201: AALVKFFETL RVEISPDIKI TIALPGFIST DMTTPQFKEM YGSDFILSES VSRCAKAIFR GIGRGEAYVI EPSWIKWIFL IKNVCPEIVD YLLDYIFVSY
301: LKPYFKRD
Arabidopsis Description
ATHSD2Hydroxysteroid dehydrogenase 2 [Source:UniProtKB/TrEMBL;Acc:F4JBH8]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.