Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09733 | Canola | endoplasmic reticulum, golgi | 99.68 | 99.68 |
| Bra012757.1-P | Field mustard | extracellular, golgi | 99.35 | 99.35 |
| CDX83013 | Canola | endoplasmic reticulum | 29.77 | 70.23 |
| CDY21787 | Canola | endoplasmic reticulum, golgi | 67.64 | 67.42 |
| CDX83014 | Canola | mitochondrion | 41.42 | 63.37 |
| CDY05818 | Canola | endoplasmic reticulum, extracellular | 27.18 | 53.85 |
| CDX71662 | Canola | plasma membrane, vacuole | 47.57 | 49.16 |
| CDX91557 | Canola | plasma membrane | 42.39 | 45.8 |
| CDY16351 | Canola | plasma membrane | 45.95 | 45.66 |
| KRH59795 | Soybean | extracellular | 47.57 | 45.51 |
| TraesCS2B01G302200.1 | Wheat | plasma membrane, vacuole | 34.95 | 43.55 |
| CDY16353 | Canola | cytosol | 47.9 | 42.41 |
| CDY34029 | Canola | cytosol | 46.6 | 42.23 |
| CDY68167 | Canola | cytosol | 47.25 | 41.83 |
| CDX83157 | Canola | cytosol | 39.48 | 39.23 |
| Solyc07g052270.2.1 | Tomato | endoplasmic reticulum, vacuole | 44.66 | 39.09 |
| Zm00001d003938_P001 | Maize | golgi, vacuole | 42.72 | 37.71 |
| OQU81408 | Sorghum | extracellular, golgi, vacuole | 41.42 | 36.47 |
| TraesCS2D01G284000.2 | Wheat | plasma membrane, vacuole | 41.1 | 36.18 |
| HORVU2Hr1G070360.1 | Barley | plasma membrane | 41.75 | 35.15 |
| CDX94277 | Canola | mitochondrion | 10.03 | 33.33 |
| Os04t0390800-01 | Rice | plastid | 36.25 | 31.02 |
| TraesCS2A01G285100.1 | Wheat | mitochondrion | 40.13 | 30.54 |
| CDX90742 | Canola | cytosol | 39.81 | 27.27 |
| CDY05081 | Canola | cytosol | 39.81 | 26.97 |
| CDY43128 | Canola | extracellular, golgi, vacuole | 27.83 | 26.22 |
| CDY50699 | Canola | extracellular, golgi, vacuole | 27.51 | 25.91 |
| CDY50698 | Canola | vacuole | 24.92 | 24.52 |
| CDY43129 | Canola | extracellular, golgi, vacuole | 25.89 | 19.61 |
| CDX75819 | Canola | cytosol, nucleus, plasma membrane | 2.27 | 10.61 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:5.9.4 | GO:A0A078DN43 | EnsemblPlants:CDX90560 | ProteinID:CDX90560 | ProteinID:CDX90560.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | EnsemblPlantsGene:GSBRNA2T00151194001 |
| InterPro:NAD(P)-bd_dom_sf | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR43391 |
| PANTHER:PTHR43391:SF10 | InterPro:SDR_fam | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | TMHMM:TMhelix | UniParc:UPI0004EEE4E8 |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g42210D
Coordinates
chrLK031863:+:863801..867334
Molecular Weight (calculated)
34655.6 Da
IEP (calculated)
8.743
GRAVY (calculated)
0.310
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMLHIILNI LLPPLTIIFL FLFYPIYLFI KLLNCVRKHL CVENVAGKVV LITGASSGIG EHVAYEYAKK GADLALVARR EDRLQIVADT SRKLGSRDVI
101: IIPGDVTKIN DCMKFISETI SHFGKVDHLI NNAGVSQTVL FENFSQIQDA NPIMDTNFWG STNITYYAIP HLRKSKGKIV VIASAAAKIA IPVATIYSAS
201: KAALLGFYEA LRIELNPDIK VTIVFPGLIS TDMTTPEIIK RHGSDFMVSE PVSRCAKAIF QGVCRGEEYV ETPSWIKWFF LVKSVCPEVI NSIFNYSFLH
301: FIKPYFKRE
101: IIPGDVTKIN DCMKFISETI SHFGKVDHLI NNAGVSQTVL FENFSQIQDA NPIMDTNFWG STNITYYAIP HLRKSKGKIV VIASAAAKIA IPVATIYSAS
201: KAALLGFYEA LRIELNPDIK VTIVFPGLIS TDMTTPEIIK RHGSDFMVSE PVSRCAKAIF QGVCRGEEYV ETPSWIKWFF LVKSVCPEVI NSIFNYSFLH
301: FIKPYFKRE
001: MDMLHTILNF LLPPLTISFL VLFYPFYLFT KLMSCLKHLH FENVTGKVVL ITGASSGIGE HVAYEYAKKG AKLALVARRK DRLEIVAETS RQLGSGDVII
101: IPGDVSNVED CKKFIDETIH HFGKLDHLIN NAGVPQTVIF EDFTQIQDAN SIMDINFWGS TYITYFAIPH LRKSKGKIVV ISSATAIIPL QAASVYSASK
201: AALVKFFETL RVEISPDIKI TIALPGFIST DMTTPQFKEM YGSDFILSES VSRCAKAIFR GIGRGEAYVI EPSWIKWIFL IKNVCPEIVD YLLDYIFVSY
301: LKPYFKRD
101: IPGDVSNVED CKKFIDETIH HFGKLDHLIN NAGVPQTVIF EDFTQIQDAN SIMDINFWGS TYITYFAIPH LRKSKGKIVV ISSATAIIPL QAASVYSASK
201: AALVKFFETL RVEISPDIKI TIALPGFIST DMTTPQFKEM YGSDFILSES VSRCAKAIFR GIGRGEAYVI EPSWIKWIFL IKNVCPEIVD YLLDYIFVSY
301: LKPYFKRD
Arabidopsis Description
ATHSD2Hydroxysteroid dehydrogenase 2 [Source:UniProtKB/TrEMBL;Acc:F4JBH8]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.