Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cytosol:
21803444
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83157 | Canola | cytosol | 82.4 | 90.35 |
| CDY68167 | Canola | cytosol | 90.62 | 88.54 |
| CDY16353 | Canola | cytosol | 89.15 | 87.11 |
| AT5G50700.1 | Thale cress | endoplasmic reticulum | 87.39 | 85.39 |
| AT5G50600.1 | Thale cress | endoplasmic reticulum | 87.39 | 85.39 |
| Solyc06g072670.2.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 64.52 | 63.04 |
| PGSC0003DMT400069254 | Potato | endoplasmic reticulum, extracellular, golgi | 63.93 | 62.46 |
| PGSC0003DMT400092688 | Potato | endoplasmic reticulum | 58.65 | 60.06 |
| Solyc03g097440.2.1 | Tomato | plastid | 60.12 | 58.24 |
| PGSC0003DMT400068094 | Potato | extracellular, plasma membrane, vacuole | 57.18 | 57.69 |
| KRH59797 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 33.43 | 55.88 |
| VIT_17s0000g01050.t01 | Wine grape | golgi, vacuole | 52.2 | 55.28 |
| CDY05818 | Canola | endoplasmic reticulum, extracellular | 23.46 | 51.28 |
| TraesCS2B01G302200.1 | Wheat | plasma membrane, vacuole | 35.48 | 48.79 |
| CDX71662 | Canola | plasma membrane, vacuole | 41.35 | 47.16 |
| CDY16351 | Canola | plasma membrane | 42.82 | 46.95 |
| CDY09733 | Canola | endoplasmic reticulum, golgi | 42.52 | 46.93 |
| CDX90560 | Canola | endoplasmic reticulum | 42.23 | 46.6 |
| CDX91557 | Canola | plasma membrane | 38.42 | 45.8 |
| TraesCS2D01G284000.2 | Wheat | plasma membrane, vacuole | 46.63 | 45.3 |
| CDY21787 | Canola | endoplasmic reticulum, golgi | 41.06 | 45.16 |
| OQU81408 | Sorghum | extracellular, golgi, vacuole | 46.04 | 44.73 |
| HORVU2Hr1G070360.1 | Barley | plasma membrane | 48.09 | 44.69 |
| CDX83013 | Canola | endoplasmic reticulum | 17.01 | 44.27 |
| Zm00001d003938_P001 | Maize | golgi, vacuole | 45.16 | 44.0 |
| CDX83014 | Canola | mitochondrion | 24.93 | 42.08 |
| Os04t0390800-01 | Rice | plastid | 42.23 | 39.89 |
| TraesCS2A01G285100.1 | Wheat | mitochondrion | 46.33 | 38.92 |
| CDX90742 | Canola | cytosol | 40.47 | 30.6 |
| CDX94277 | Canola | mitochondrion | 8.21 | 30.11 |
| CDY05081 | Canola | cytosol | 40.18 | 30.04 |
| CDY50699 | Canola | extracellular, golgi, vacuole | 23.17 | 24.09 |
| CDY43128 | Canola | extracellular, golgi, vacuole | 23.17 | 24.09 |
| CDY50698 | Canola | vacuole | 21.11 | 22.93 |
| CDY43129 | Canola | extracellular, golgi, vacuole | 23.17 | 19.36 |
| CDX75819 | Canola | cytosol, nucleus, plasma membrane | 3.52 | 18.18 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:5.9.4 | GO:A0A078H997 | UniProt:A0A078H997 | EnsemblPlants:CDY34029 | ProteinID:CDY34029 |
| ProteinID:CDY34029.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00055897001 | InterPro:NAD(P)-bd_dom_sf |
| PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR43391 | PANTHER:PTHR43391:SF10 |
| InterPro:SDR_fam | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | TMHMM:TMhelix | UniParc:UPI0004EB98B6 | SEG:seg |
Description
BnaC03g27860DBnaC03g27860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H997]
Coordinates
chrLK032326:-:285199..287083
Molecular Weight (calculated)
38248.1 Da
IEP (calculated)
6.513
GRAVY (calculated)
0.109
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MELINDFLNL TAPFFTFFGL CFFLPPFIFF KFLQSIFSTI FCENLNGKVV LITGASSGIG ERLAYEYASK GACLALTALR KNRLEEVAEI AREVGSPNVV
101: TVHADVSKPD DCRRIVDETI SHFGRLDHLV NNAGITKISM FENFEEITRT RSVMDTNFWG SVYTTRAALP YLRQSNGKIV VMSSSAAWLT APRMSFYNAS
201: KAALLNFFET LRIELGGDVH ITIVTPGYTQ FELAQGKYFS AEGELVVDQD VRDVQVGGFP VASVSGCAKE IVNGVCRKQR YVTEPSWFKV TYLWKVFCPE
301: LIEWGCRLLF MTTSEENALN KKILDNTGVR GVLYPESIRT L
101: TVHADVSKPD DCRRIVDETI SHFGRLDHLV NNAGITKISM FENFEEITRT RSVMDTNFWG SVYTTRAALP YLRQSNGKIV VMSSSAAWLT APRMSFYNAS
201: KAALLNFFET LRIELGGDVH ITIVTPGYTQ FELAQGKYFS AEGELVVDQD VRDVQVGGFP VASVSGCAKE IVNGVCRKQR YVTEPSWFKV TYLWKVFCPE
301: LIEWGCRLLF MTTSEENALN KKILDNTGVR GVLYPESIRT L
001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
Arabidopsis Description
HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.