CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83013	Canola	endoplasmic reticulum	31.18	22.14
CDY05818	Canola	endoplasmic reticulum, extracellular	32.26	19.23
TraesCS2B01G302200.1	Wheat	plasma membrane, vacuole	35.48	13.31
CDX71662	Canola	plasma membrane, vacuole	33.33	10.37
CDX90742	Canola	cytosol	49.46	10.2
CDY05081	Canola	cytosol	49.46	10.09
CDX90560	Canola	endoplasmic reticulum	33.33	10.03
CDY09733	Canola	endoplasmic reticulum, golgi	33.33	10.03
CDY21787	Canola	endoplasmic reticulum, golgi	32.26	9.68
TraesCS2D01G284000.2	Wheat	plasma membrane, vacuole	35.48	9.4
Zm00001d003938_P001	Maize	golgi, vacuole	33.33	8.86
HORVU2Hr1G070360.1	Barley	plasma membrane	34.41	8.72
OQU81408	Sorghum	extracellular, golgi, vacuole	32.26	8.55
CDX91557	Canola	plasma membrane	25.81	8.39
Solyc07g052270.2.1	Tomato	endoplasmic reticulum, vacuole	31.18	8.22
CDY34029	Canola	cytosol	30.11	8.21
CDY16351	Canola	plasma membrane	26.88	8.04
CDY68167	Canola	cytosol	30.11	8.02
CDY16353	Canola	cytosol	30.11	8.02
TraesCS2A01G285100.1	Wheat	mitochondrion	34.41	7.88
Os04t0390800-01	Rice	plastid	27.96	7.2
CDY43128	Canola	extracellular, golgi, vacuole	24.73	7.01
CDY50699	Canola	extracellular, golgi, vacuole	23.66	6.71
CDY50698	Canola	vacuole	20.43	6.05
CDX83157	Canola	cytosol	19.35	5.79
CDY43129	Canola	extracellular, golgi, vacuole	24.73	5.64
CDX75819	Canola	cytosol, nucleus, plasma membrane	1.08	1.52
CDX83014	Canola	mitochondrion	2.15	0.99

Protein Annotations

EnsemblPlants:CDX94277	EnsemblPlantsGene:GSBRNA2T00157343001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR43391	PANTHER:PTHR43391:SF14
ProteinID:CDX94277	ProteinID:CDX94277.1	SUPFAM:SSF51735	UniParc:UPI0004EEBF62	MapMan:35.1	:

Description

BnaC02g29370D

Coordinates

chrLK031880:-:1235600..1236412

Molecular Weight (calculated)

10797.5 Da

IEP (calculated)

12.090

GRAVY (calculated)

-0.282

Length

93 amino acids

Sequence
(BLAST)

1: MLHIGWRIKE KRMWQKTTLI LLSKRWMEDK VLVITGASST TGDSARYEYA QRGANLVMVA SRKQRLRVVR NNAKMIRANS VIIIAADLIN QRR

Best Arabidopsis Sequence Match ( AT4G10020.1 )
(BLAST)

001: MVDLLNSVMN LVAPPATMVV MAFAWPLLSF ISFSERAYNS YFATENMEDK VVVITGASSA IGEQIAYEYA KRGANLVLVA RREQRLRVVS NKAKQIGANH
101: VIIIAADVIK EDDCRRFITQ AVNYYGRVDH LVNTASLGHT FYFEEVSDTT VFPHLLDINF WGNVYPTYVA LPYLHQTNGR IVVNASVENW LPLPRMSLYS
201: AAKAALVNFY ETLRFELNGD VGITIATHGW IGSEMSGGKF MLEEGAEMQW KEEREVPANG GPLEEFAKMI VAGACRGDAY VKFPNWYDVF LLYRVFTPNV
301: LRWTFKLLLS TEGTRRSSLV GVGSGMPVDE SSSQMKLMLE GGPPRVPASP PRYTASPPHY TASPPRYPAS PPRYPASPPR FSQFNIQEL

Arabidopsis Description

HSD511-beta-hydroxysteroid dehydrogenase-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0G0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.