CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21787	Canola	endoplasmic reticulum, golgi	65.84	42.9
CDY09733	Canola	endoplasmic reticulum, golgi	63.86	41.75
CDX90560	Canola	endoplasmic reticulum	63.37	41.42
AT3G47350.2	Thale cress	endoplasmic reticulum	56.44	35.51
CDX71662	Canola	plasma membrane, vacuole	41.09	27.76
CDX83157	Canola	cytosol	42.08	27.33
CDY16351	Canola	plasma membrane	39.11	25.4
CDX91557	Canola	plasma membrane	35.64	25.17
CDY68167	Canola	cytosol	43.07	24.93
CDY16353	Canola	cytosol	43.07	24.93
CDY34029	Canola	cytosol	42.08	24.93
KRH59795	Soybean	extracellular	39.6	24.77
Solyc07g052270.2.1	Tomato	endoplasmic reticulum, vacuole	42.08	24.08
Zm00001d003938_P001	Maize	golgi, vacuole	37.13	21.43
TraesCS2B01G302200.1	Wheat	plasma membrane, vacuole	26.24	21.37
OQU81408	Sorghum	extracellular, golgi, vacuole	37.13	21.37
TraesCS2D01G284000.2	Wheat	plasma membrane, vacuole	36.14	20.8
Os04t0390800-01	Rice	plastid	36.63	20.5
HORVU2Hr1G070360.1	Barley	plasma membrane	35.64	19.62
TraesCS2A01G285100.1	Wheat	mitochondrion	34.65	17.24
CDX90742	Canola	cytosol	33.17	14.86
CDY05081	Canola	cytosol	33.17	14.69
CDY50698	Canola	vacuole	22.77	14.65
CDY50699	Canola	extracellular, golgi, vacuole	23.27	14.33
CDY43128	Canola	extracellular, golgi, vacuole	22.77	14.02
CDY05818	Canola	endoplasmic reticulum, extracellular	10.4	13.46
CDX75819	Canola	cytosol, nucleus, plasma membrane	3.96	12.12
CDY43129	Canola	extracellular, golgi, vacuole	24.26	12.01
CDX83013	Canola	endoplasmic reticulum	2.97	4.58
CDX94277	Canola	mitochondrion	0.99	2.15

Protein Annotations

EnsemblPlants:CDX83014	EnsemblPlantsGene:GSBRNA2T00138466001	Gene3D:3.40.50.720	GO:A0A078D443	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	InterPro:Sc_DH/Rdtase_CS
PANTHER:PTHR43391	PANTHER:PTHR43391:SF10	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ProteinID:CDX83014
ProteinID:CDX83014.1	ScanProsite:PS00061	SUPFAM:SSF51735	UniParc:UPI0004EDD7F3	MapMan:5.9.4	:

Description

BnaA01g20140D

Coordinates

chrLK031831:+:481595..484664

Molecular Weight (calculated)

23140.5 Da

IEP (calculated)

8.914

GRAVY (calculated)

0.200

Length

202 amino acids

Sequence
(BLAST)

001: MVLLGRRPIH HCLRRPIVMD HLINNAGVTQ TVVFEDYFHI QAANPIMDIN FWGSTYITYF AIPHLRKSKG KVIVITSGAA NIALPVASVY SASKAALLRF
101: FETLRIELNP DIKITIVFPG VVATDMTTPR CIEHYGSDFI FTEPVSRCAK GIFNGICRGE TYIEEPSWMK WIYVMKNVCP EIVEYVLNYI YIRSLKPFFK
201: RD

Best Arabidopsis Sequence Match ( AT3G47360.1 )
(BLAST)

001: MDILTTILNL LLPPLTIIFL FLFYPFYLLI KLVLCLRKNL HFENVARKVV LITGASSGIG EHVAYEYAKK GAYLALVARR RDRLEIVAET SRQLGSGNVI
101: IIPGDVSNVE DCKKFIDETI RHFGKLDHLI NNAGVFQTVL FEDFTQIQDA NPIMDINFWG TTYITYFAIP HLRKSKGKIV AITSGSANIP LPLASIYAAS
201: KAALLRFFET LRIELSPDIK ITIVLPGVVS TDMTTPHCIE KYGSDFILSE SVSKCAKAIF RGIGRGETYI EEPSWMKWLF IMKNVCPEIV DYGLNYLFVS
301: YLKPYFKRD

Arabidopsis Description

HSD311-beta-hydroxysteroid dehydrogenase-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9STY7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.