Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 5
- vacuole 4
- plasma membrane 4
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16351 | Canola | plasma membrane | 75.73 | 83.28 |
| Bra022525.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 75.44 | 82.96 |
| CDX91557 | Canola | plasma membrane | 67.84 | 81.12 |
| PGSC0003DMT400028017 | Potato | cytosol | 12.87 | 51.76 |
| KRH59794 | Soybean | extracellular, plasma membrane | 16.37 | 50.0 |
| VIT_17s0000g01030.t01 | Wine grape | endoplasmic reticulum, extracellular | 7.02 | 48.98 |
| Solyc07g052270.2.1 | Tomato | endoplasmic reticulum, vacuole | 50.29 | 48.73 |
| TraesCS2B01G302200.1 | Wheat | plasma membrane, vacuole | 34.8 | 47.98 |
| AT3G47360.1 | Thale cress | endoplasmic reticulum | 41.23 | 45.63 |
| AT5G50690.1 | Thale cress | extracellular, plasma membrane | 39.77 | 45.48 |
| AT5G50590.1 | Thale cress | extracellular, plasma membrane | 39.77 | 45.48 |
| AT5G50700.1 | Thale cress | endoplasmic reticulum | 45.32 | 44.41 |
| AT5G50600.1 | Thale cress | endoplasmic reticulum | 45.32 | 44.41 |
| OQU81408 | Sorghum | extracellular, golgi, vacuole | 45.03 | 43.87 |
| TraesCS2D01G284000.2 | Wheat | plasma membrane, vacuole | 43.57 | 42.45 |
| Zm00001d003938_P001 | Maize | golgi, vacuole | 43.27 | 42.29 |
| AT3G47350.2 | Thale cress | endoplasmic reticulum | 38.89 | 41.43 |
| PGSC0003DMT400028018 | Potato | plastid | 21.05 | 41.38 |
| HORVU2Hr1G070360.1 | Barley | plasma membrane | 43.86 | 40.87 |
| Os04t0390800-01 | Rice | plastid | 41.23 | 39.06 |
| TraesCS2A01G285100.1 | Wheat | mitochondrion | 42.69 | 35.96 |
| AT4G10020.1 | Thale cress | endoplasmic reticulum | 37.13 | 32.65 |
| AT3G03330.1 | Thale cress | golgi | 22.81 | 23.78 |
| AT3G03350.2 | Thale cress | vacuole | 14.91 | 13.64 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:5.9.4 | EntrezGene:835149 | ProteinID:AED95990.1 | ArrayExpress:AT5G50770 | EnsemblPlantsGene:AT5G50770 |
| RefSeq:AT5G50770 | TAIR:AT5G50770 | RefSeq:AT5G50770-TAIR-G | EnsemblPlants:AT5G50770.1 | TAIR:AT5G50770.1 | Unigene:At.29714 |
| Symbol:AtHSD6 | ProteinID:BAA96990.1 | EMBL:BT020525 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0006629 | GO:GO:0006694 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_199890.1 | PFAM:PF00106 |
| PO:PO:0000013 | PO:PO:0000230 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR43391 |
| PANTHER:PTHR43391:SF10 | UniProt:Q9LUE4 | InterPro:SDR_fam | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | TMHMM:TMhelix |
| UniParc:UPI0000048C43 | SEG:seg | : | : | : | : |
Description
HSD611-beta-hydroxysteroid dehydrogenase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUE4]
Coordinates
chr5:-:20646680..20648725
Molecular Weight (calculated)
37995.5 Da
IEP (calculated)
7.924
GRAVY (calculated)
0.365
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSINKIINF LFPLLTLYAL LVFYPTYQRL KSAVSICRNL FSENVAGKVV VITGAASGIG EALAYEYGKR GAYLALVDIR GEPLFHVAAL AELYGSPEVL
101: PLVADVSKLQ DCERFIRATV LHFGRLDHLV TNAGVAPLYF FADIEDVSKA SPAMDINFWG SVYCTFFASP YLKKFRGRIV VIASGCGYIA SPRLSFYCAS
201: KAAVIAFYET LRTEFGSDIG VTIVAPGIVD SEMSRGKFMT KDGKLVVDKE LRDVQMSVLP VESAERCAKA IMRSVCRGDR YLLEPDWIGC VILLKVFCSE
301: ATEWVARWLL IARPKFPMME ALSNKILDVA HAFNSFFSFP HY
101: PLVADVSKLQ DCERFIRATV LHFGRLDHLV TNAGVAPLYF FADIEDVSKA SPAMDINFWG SVYCTFFASP YLKKFRGRIV VIASGCGYIA SPRLSFYCAS
201: KAAVIAFYET LRTEFGSDIG VTIVAPGIVD SEMSRGKFMT KDGKLVVDKE LRDVQMSVLP VESAERCAKA IMRSVCRGDR YLLEPDWIGC VILLKVFCSE
301: ATEWVARWLL IARPKFPMME ALSNKILDVA HAFNSFFSFP HY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.