Factsheet for Bra022525.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16351	Canola	plasma membrane	99.68	99.68
CDX91557	Canola	plasma membrane	85.85	93.36
AT5G50770.1	Thale cress	endoplasmic reticulum	82.96	75.44
KRH59794	Soybean	extracellular, plasma membrane	18.33	50.89
PGSC0003DMT400028017	Potato	cytosol	13.83	50.59
VIT_17s0000g01030.t01	Wine grape	endoplasmic reticulum, extracellular	7.72	48.98
TraesCS2B01G302200.1	Wheat	plasma membrane, vacuole	36.98	46.37
Bra012757.1-P	Field mustard	extracellular, golgi	45.34	45.63
Solyc07g052270.2.1	Tomato	endoplasmic reticulum, vacuole	50.48	44.48
Bra041076.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	42.44	44.15
Bra000626.1-P	Field mustard	endoplasmic reticulum, extracellular	46.62	42.52
Bra022523.1-P	Field mustard	endoplasmic reticulum, extracellular	47.59	42.41
Bra033794.1-P	Field mustard	endoplasmic reticulum, plasma membrane	38.26	42.2
OQU81408	Sorghum	extracellular, golgi, vacuole	45.02	39.89
Zm00001d003938_P001	Maize	golgi, vacuole	44.37	39.43
TraesCS2D01G284000.2	Wheat	plasma membrane, vacuole	44.37	39.32
PGSC0003DMT400028018	Potato	plastid	21.22	37.93
HORVU2Hr1G070360.1	Barley	plasma membrane	44.69	37.87
Os04t0390800-01	Rice	plastid	40.19	34.63
TraesCS2A01G285100.1	Wheat	mitochondrion	43.73	33.5
Bra000697.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	38.91	27.07
Bra031995.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	23.47	22.26
Bra031996.1-P	Field mustard	endoplasmic reticulum, vacuole	19.61	17.04

Protein Annotations

Gene3D:3.40.50.720	MapMan:5.9.4	EnsemblPlantsGene:Bra022525	EnsemblPlants:Bra022525.1	EnsemblPlants:Bra022525.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0055114	UniProt:M4E177	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080
PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43391	PANTHER:PTHR43391:SF10	InterPro:SDR_fam	SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI0002545583	:	:	:

Description

AT5G50770 (E=2e-149) AtHSD6 | AtHSD6 (hydroxysteroid dehydrogenase 6); binding / catalytic/ oxidoreductase

Coordinates

chrA02:+:9236089..9238132

Molecular Weight (calculated)

34337.9 Da

IEP (calculated)

7.968

GRAVY (calculated)

0.342

Length

311 amino acids

Sequence
(BLAST)

001: MDSVNRIINF VFPPLALYGL FVFYPIYQRL KSAVSIWRNV LSENVAGKVV LITGAASGIG EATYEYGKKG AYLALVDIRD EPLFHVAALA ELYGSPEVIP
101: MVADVSKLHD CKRFIQATVL HFGRLDHLVT NAGVAPLYLF EDIDDLSKAM PAMDINFWGS VYCTFFASSY LKKSRGKIVV IASGCGYIAS PRLSFYCASK
201: AAVIAFYETL RSEFGSKVGV TIAAPGVVDS EMTQGKFMTK NGQFIVDKEL RDVQISLLPV ESAERCAKAI LRSVCRGDRY LLEPAWISCV ILWKVFCSEV
301: TDSLGRWLVM G

Best Arabidopsis Sequence Match ( AT5G50770.1 )
(BLAST)

001: MDSINKIINF LFPLLTLYAL LVFYPTYQRL KSAVSICRNL FSENVAGKVV VITGAASGIG EALAYEYGKR GAYLALVDIR GEPLFHVAAL AELYGSPEVL
101: PLVADVSKLQ DCERFIRATV LHFGRLDHLV TNAGVAPLYF FADIEDVSKA SPAMDINFWG SVYCTFFASP YLKKFRGRIV VIASGCGYIA SPRLSFYCAS
201: KAAVIAFYET LRTEFGSDIG VTIVAPGIVD SEMSRGKFMT KDGKLVVDKE LRDVQMSVLP VESAERCAKA IMRSVCRGDR YLLEPDWIGC VILLKVFCSE
301: ATEWVARWLL IARPKFPMME ALSNKILDVA HAFNSFFSFP HY

Arabidopsis Description

HSD611-beta-hydroxysteroid dehydrogenase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUE4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.