Factsheet for Bra041076.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05818	Canola	endoplasmic reticulum, extracellular	51.84	99.36
CDX71662	Canola	plasma membrane, vacuole	98.33	98.33
AT5G50690.1	Thale cress	extracellular, plasma membrane	87.96	87.96
AT5G50590.1	Thale cress	extracellular, plasma membrane	87.96	87.96
Bra012757.1-P	Field mustard	extracellular, golgi	49.16	47.57
TraesCS2B01G302200.1	Wheat	plasma membrane, vacuole	38.8	46.77
Bra033794.1-P	Field mustard	endoplasmic reticulum, plasma membrane	43.14	45.74
KRH59795	Soybean	extracellular	49.16	45.51
Bra022525.1-P	Field mustard	endoplasmic reticulum, plasma membrane	44.15	42.44
Bra000626.1-P	Field mustard	endoplasmic reticulum, extracellular	47.16	41.35
Bra022523.1-P	Field mustard	endoplasmic reticulum, extracellular	48.16	41.26
Solyc07g052270.2.1	Tomato	endoplasmic reticulum, vacuole	48.49	41.08
Zm00001d003938_P001	Maize	golgi, vacuole	42.47	36.29
TraesCS2D01G284000.2	Wheat	plasma membrane, vacuole	42.14	35.9
OQU81408	Sorghum	extracellular, golgi, vacuole	41.81	35.61
HORVU2Hr1G070360.1	Barley	plasma membrane	42.47	34.6
Os04t0390800-01	Rice	plastid	41.47	34.35
TraesCS2A01G285100.1	Wheat	mitochondrion	42.81	31.53
Bra000697.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	37.12	24.83
Bra031995.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	27.09	24.7
Bra031996.1-P	Field mustard	endoplasmic reticulum, vacuole	22.07	18.44

Protein Annotations

Gene3D:3.40.50.720	MapMan:5.9.4	EnsemblPlantsGene:Bra041076	EnsemblPlants:Bra041076.1	EnsemblPlants:Bra041076.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0055114	UniProt:M4FIZ7	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080
PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43391	PANTHER:PTHR43391:SF10	InterPro:SDR_fam	SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI000253ECAC	:	:	:

Description

AT5G50590 (E=1e-152) AtHSD4 | AtHSD4 (hydroxysteroid dehydrogenase 4); binding / catalytic/ oxidoreductase

Coordinates

chrScaffold000465:+:6066..8661

Molecular Weight (calculated)

33149.6 Da

IEP (calculated)

8.936

GRAVY (calculated)

0.233

Length

299 amino acids

Sequence
(BLAST)

001: MALINKILNI FLPIVTFSLL VVFMPISILF SLFGFIRNSK ESDKVNGKVV IITGSSSGIG EHLAYEYARR GAYLTLVARR EDRLQLVANR CQRLGSPDVA
101: VVRGDVSVIE DCKRFIEETI SRFGRLDHLV NNAGIAEAKF FEDYLQISDV LPIMNTNFWG PVYTTHFAIP HLKKSKGKIV AVASPAGWSG VPRMSIYAAS
201: KAAMINFYET LRIELGPEIG VTIVFPGLVE NGNTNPDLLA EKQDWSQVVA IESATECAKA VVNGICRGKT FLAEPSWVRV LFWLSILCPE LLISKPKRN

Best Arabidopsis Sequence Match ( AT5G50690.1 )
(BLAST)

001: MDLNNKIFNI LLPIVTVSFL LVFMPFSIFF KLLQFIRGCK ESEKVNGKVV IITGSSSGIG EHLAYEYARR GAYLTLVARR EDRLQVVADR CRKLGSPDVA
101: VVRGDVSVIK DCKRFVQETI SRFGRLDHLV NNAGIAEAKF FEDYSEISDV LPIVNTNFWG PVYATHFAIP HLKKTKGKII AVASPAGWSG VPRMSIYAAS
201: KAAMINFYET LRIELHPEVG VTIVFPGLIE NGNTNPDLLA EKQDWSQVVT IESAAECAKA VVNGICRGKT FVAEPSWVRV LFWLSAICPE LLISKPKRN

Arabidopsis Description

HSD711-beta-hydroxysteroid dehydrogenase-like 4A [Source:UniProtKB/Swiss-Prot;Acc:P0DKC7]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.