Factsheet for AT5G50590.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

endoplasmic reticulum 5
golgi 5
extracellular 6
vacuole 4
plasma membrane 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	peroxisome, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G50690.1	Thale cress	extracellular, plasma membrane	100.0	100.0
Bra041076.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	87.96	87.96
CDX71662	Canola	plasma membrane, vacuole	87.63	87.63
CDY05818	Canola	endoplasmic reticulum, extracellular	44.15	84.62
AT3G47360.1	Thale cress	endoplasmic reticulum	49.5	47.9
KRH59795	Soybean	extracellular	48.83	45.2
TraesCS2B01G302200.1	Wheat	plasma membrane, vacuole	37.12	44.76
AT3G47350.2	Thale cress	endoplasmic reticulum	45.48	42.37
AT5G50600.1	Thale cress	endoplasmic reticulum	48.16	41.26
AT5G50700.1	Thale cress	endoplasmic reticulum	48.16	41.26
Solyc07g052270.2.1	Tomato	endoplasmic reticulum, vacuole	47.16	39.94
AT5G50770.1	Thale cress	endoplasmic reticulum	45.48	39.77
Zm00001d003938_P001	Maize	golgi, vacuole	41.81	35.71
TraesCS2D01G284000.2	Wheat	plasma membrane, vacuole	41.81	35.61
OQU81408	Sorghum	extracellular, golgi, vacuole	41.14	35.04
HORVU2Hr1G070360.1	Barley	plasma membrane	42.81	34.88
Os04t0390800-01	Rice	plastid	41.47	34.35
TraesCS2A01G285100.1	Wheat	mitochondrion	41.81	30.79
AT4G10020.1	Thale cress	endoplasmic reticulum	37.46	28.79
AT3G03330.1	Thale cress	golgi	25.42	23.17
AT3G03350.2	Thale cress	vacuole	15.72	12.57

Protein Annotations

Gene3D:3.40.50.720	MapMan:5.9.4	EntrezGene:835128	EntrezGene:835140	ProteinID:AED95966.1	ProteinID:AED95980.1
ArrayExpress:AT5G50590	EnsemblPlantsGene:AT5G50590	RefSeq:AT5G50590	TAIR:AT5G50590	RefSeq:AT5G50590-TAIR-G	EnsemblPlants:AT5G50590.1
TAIR:AT5G50590.1	Symbol:AtHSD4	ProteinID:BAA96982.1	ProteinID:BAB09144.1	EMBL:BT026066	EMBL:DQ056713
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006694	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114
InterPro:NAD(P)-bd_dom_sf	RefSeq:NP_199871.1	RefSeq:NP_680417.1	UniProt:P0DKC7	PFAM:PF00106	PRINTS:PR00080
PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43391	PANTHER:PTHR43391:SF10	UniProt:Q9LUF2	InterPro:SDR_fam
SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI0000048C3F	:	:

Description

HSD711-beta-hydroxysteroid dehydrogenase-like 4A [Source:UniProtKB/Swiss-Prot;Acc:P0DKC7]

Coordinates

chr5:+:20587936..20589490

Molecular Weight (calculated)

33249.6 Da

IEP (calculated)

9.190

GRAVY (calculated)

0.168

Length

299 amino acids

Sequence
(BLAST)

001: MDLNNKIFNI LLPIVTVSFL LVFMPFSIFF KLLQFIRGCK ESEKVNGKVV IITGSSSGIG EHLAYEYARR GAYLTLVARR EDRLQVVADR CRKLGSPDVA
101: VVRGDVSVIK DCKRFVQETI SRFGRLDHLV NNAGIAEAKF FEDYSEISDV LPIVNTNFWG PVYATHFAIP HLKKTKGKII AVASPAGWSG VPRMSIYAAS
201: KAAMINFYET LRIELHPEVG VTIVFPGLIE NGNTNPDLLA EKQDWSQVVT IESAAECAKA VVNGICRGKT FVAEPSWVRV LFWLSAICPE LLISKPKRN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.