Factsheet for PGSC0003DMT400028018

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g01030.t01	Wine grape	endoplasmic reticulum, extracellular	11.49	40.82
Bra022525.1-P	Field mustard	endoplasmic reticulum, plasma membrane	37.93	21.22
AT5G50770.1	Thale cress	endoplasmic reticulum	41.38	21.05
PGSC0003DMT400068094	Potato	extracellular, plasma membrane, vacuole	40.8	21.01
CDY16351	Canola	plasma membrane	37.36	20.9
PGSC0003DMT400069254	Potato	endoplasmic reticulum, extracellular, golgi	40.8	20.34
CDX91557	Canola	plasma membrane	33.33	20.28
PGSC0003DMT400074514	Potato	endoplasmic reticulum, golgi	40.23	19.83
Os04t0390800-01	Rice	plastid	40.23	19.39
TraesCS2B01G302200.1	Wheat	plasma membrane, vacuole	27.59	19.35
KRH41112	Soybean	endoplasmic reticulum, golgi	41.38	19.1
PGSC0003DMT400092688	Potato	endoplasmic reticulum	35.63	18.62
TraesCS2D01G284000.2	Wheat	plasma membrane, vacuole	37.36	18.52
Zm00001d003938_P001	Maize	golgi, vacuole	36.78	18.29
OQU81408	Sorghum	extracellular, golgi, vacuole	36.78	18.23
HORVU2Hr1G070360.1	Barley	plasma membrane	36.78	17.44
TraesCS2A01G285100.1	Wheat	mitochondrion	37.36	16.01
PGSC0003DMT400066088	Potato	endoplasmic reticulum, extracellular	10.92	10.05
KRH59794	Soybean	extracellular, plasma membrane	2.87	4.46
PGSC0003DMT400028017	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400028018	EnsemblPlantsGene:PGSC0003DMG402010803	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	InterPro:Sc_DH/Rdtase_CS
PANTHER:PTHR43391	PANTHER:PTHR43391:SF10	PFAM:PF00106	PGSC:PGSC0003DMG402010803	ScanProsite:PS00061	SUPFAM:SSF51735
UniParc:UPI000295BDA1	UniProt:M1AQJ6	MapMan:5.9.4	:	:	:

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402010803]

Coordinates

chr5:+:15783106..15785056

Molecular Weight (calculated)

19364.6 Da

IEP (calculated)

8.936

GRAVY (calculated)

0.291

Length

174 amino acids

Sequence
(BLAST)

001: MFTSLMDINF WGSVYPTYVT IPHLKKTRGK VFVNSSSGAI FHPPSISFYT ASKAALISFY ETMRVELAPE ISITIATLGY TDSEILGGKH LKDGVMQINS
101: QLFSDATVLP VISCSDCAKS IISAICRKER YITEPKYISV LFFVKSVCPQ AFEWIYRTFA HKLCIGHASS IKIA

Best Arabidopsis Sequence Match ( AT5G50600.1 )
(BLAST)

001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD

Arabidopsis Description

HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.