Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0146g00070.t01 | Wine grape | cytosol | 43.83 | 25.45 |
| Solyc07g052270.2.1 | Tomato | endoplasmic reticulum, vacuole | 53.7 | 24.65 |
| PGSC0003DMT400074514 | Potato | endoplasmic reticulum, golgi | 53.09 | 24.36 |
| VIT_01s0146g00090.t01 | Wine grape | golgi | 46.91 | 22.96 |
| VIT_17s0000g01050.t01 | Wine grape | golgi, vacuole | 37.65 | 18.94 |
| VIT_18s0001g06750.t01 | Wine grape | endoplasmic reticulum | 40.74 | 18.64 |
| VIT_04s0023g00860.t01 | Wine grape | endoplasmic reticulum, vacuole | 23.46 | 11.95 |
| VIT_16s0039g01600.t01 | Wine grape | extracellular, nucleus, peroxisome, plastid | 3.7 | 5.13 |
| VIT_17s0000g01030.t01 | Wine grape | endoplasmic reticulum, extracellular | 1.23 | 4.08 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:5.9.4 | ProteinID:CBI15699 | ProteinID:CBI15699.3 | UniProt:D7SH19 | EMBL:FN594950 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF00106 | PRINTS:PR00081 |
| PANTHER:PTHR43391 | PANTHER:PTHR43391:SF10 | InterPro:SDR_fam | SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI0001BE0F25 |
| ArrayExpress:VIT_17s0000g01040 | EnsemblPlantsGene:VIT_17s0000g01040 | EnsemblPlants:VIT_17s0000g01040.t01 | RefSeq:XP_003634292 | RefSeq:XP_003634292.1 | SEG:seg |
Description
No Description!
Coordinates
chr17:-:744117..746348
Molecular Weight (calculated)
17991.2 Da
IEP (calculated)
8.752
GRAVY (calculated)
0.445
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFIHKVLNI ALHSMGLITL LFFLLSFLSF NSLFFILRSL LSEDVAGKVV LITGASSGIG EHLAYQYARR GACLVLVARK EKSIQEVADR ARSLGSPEVL
101: VIRADVSKVE VCKSFVDEAV EHFRRLDHLV NNAGITPVRM FKDSTDITNF VPVMDKLLGI NL
101: VIRADVSKVE VCKSFVDEAV EHFRRLDHLV NNAGITPVRM FKDSTDITNF VPVMDKLLGI NL
001: MDLNNKIFNI LLPIVTVSFL LVFMPFSIFF KLLQFIRGCK ESEKVNGKVV IITGSSSGIG EHLAYEYARR GAYLTLVARR EDRLQVVADR CRKLGSPDVA
101: VVRGDVSVIK DCKRFVQETI SRFGRLDHLV NNAGIAEAKF FEDYSEISDV LPIVNTNFWG PVYATHFAIP HLKKTKGKII AVASPAGWSG VPRMSIYAAS
201: KAAMINFYET LRIELHPEVG VTIVFPGLIE NGNTNPDLLA EKQDWSQVVT IESAAECAKA VVNGICRGKT FVAEPSWVRV LFWLSAICPE LLISKPKRN
101: VVRGDVSVIK DCKRFVQETI SRFGRLDHLV NNAGIAEAKF FEDYSEISDV LPIVNTNFWG PVYATHFAIP HLKKTKGKII AVASPAGWSG VPRMSIYAAS
201: KAAMINFYET LRIELHPEVG VTIVFPGLIE NGNTNPDLLA EKQDWSQVVT IESAAECAKA VVNGICRGKT FVAEPSWVRV LFWLSAICPE LLISKPKRN
Arabidopsis Description
HSD711-beta-hydroxysteroid dehydrogenase-like 4A [Source:UniProtKB/Swiss-Prot;Acc:P0DKC7]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.