Factsheet for VIT_16s0039g01600.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, extracellular, nucleus

Predictor Summary:

plastid 4
cytosol 1
peroxisome 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g01030.t01	Wine grape	endoplasmic reticulum, extracellular	14.53	34.69
VIT_01s0146g00070.t01	Wine grape	cytosol	78.63	32.97
VIT_01s0146g00090.t01	Wine grape	golgi	56.41	19.94
VIT_17s0000g01050.t01	Wine grape	golgi, vacuole	47.86	17.39
TraesCS2B01G302200.1	Wheat	plasma membrane, vacuole	36.75	17.34
VIT_18s0001g06750.t01	Wine grape	endoplasmic reticulum	42.73	14.12
TraesCS2D01G284000.2	Wheat	plasma membrane, vacuole	40.17	13.39
Os04t0390800-01	Rice	plastid	40.17	13.02
OQU81408	Sorghum	extracellular, golgi, vacuole	38.46	12.82
HORVU2Hr1G070360.1	Barley	plasma membrane	40.17	12.81
Zm00001d003938_P001	Maize	golgi, vacuole	36.75	12.29
TraesCS2A01G285100.1	Wheat	mitochondrion	40.17	11.58
VIT_04s0023g00860.t01	Wine grape	endoplasmic reticulum, vacuole	28.21	10.38
VIT_17s0000g01040.t01	Wine grape	endoplasmic reticulum	5.13	3.7

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	ProteinID:CBI26481	ProteinID:CBI26481.3	UniProt:D7T7L0	EMBL:FN595750
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43391	PANTHER:PTHR43391:SF27
InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0001BE2A25	ArrayExpress:VIT_16s0039g01600	EnsemblPlantsGene:VIT_16s0039g01600
EnsemblPlants:VIT_16s0039g01600.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:1209106..1210433

Molecular Weight (calculated)

13207.2 Da

IEP (calculated)

10.400

GRAVY (calculated)

0.177

Length

117 amino acids

Sequence
(BLAST)

001: MINLEGFSIS MLINFDVNFW GTVYPTYFAI PHLKKTKGKI FVNSSSCAFL QPPRLSFYSA SKAALIGFFE ALRIELAPSV TITIATLGII DSEMSRGKNL
101: IQGWRTHTIP RKQQRCF

Best Arabidopsis Sequence Match ( AT5G50770.1 )
(BLAST)

001: MDSINKIINF LFPLLTLYAL LVFYPTYQRL KSAVSICRNL FSENVAGKVV VITGAASGIG EALAYEYGKR GAYLALVDIR GEPLFHVAAL AELYGSPEVL
101: PLVADVSKLQ DCERFIRATV LHFGRLDHLV TNAGVAPLYF FADIEDVSKA SPAMDINFWG SVYCTFFASP YLKKFRGRIV VIASGCGYIA SPRLSFYCAS
201: KAAVIAFYET LRTEFGSDIG VTIVAPGIVD SEMSRGKFMT KDGKLVVDKE LRDVQMSVLP VESAERCAKA IMRSVCRGDR YLLEPDWIGC VILLKVFCSE
301: ATEWVARWLL IARPKFPMME ALSNKILDVA HAFNSFFSFP HY

Arabidopsis Description

HSD611-beta-hydroxysteroid dehydrogenase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUE4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.