Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- golgi 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G285000.1 | Wheat | cytosol, golgi, peroxisome, plastid | 80.71 | 80.71 |
| TraesCS2D01G283900.1 | Wheat | plastid | 79.89 | 79.89 |
| TraesCS2B01G302100.1 | Wheat | cytosol, golgi, peroxisome, plastid | 79.62 | 79.62 |
| HORVU2Hr1G070310.3 | Barley | plastid | 66.85 | 66.49 |
| Os12t0464400-01 | Rice | plastid | 50.54 | 53.3 |
| Os04t0390800-01 | Rice | plastid | 45.11 | 45.98 |
| Os11t0499600-01 | Rice | endoplasmic reticulum, golgi | 42.93 | 44.63 |
| Os02t0511100-00 | Rice | endoplasmic reticulum, golgi | 42.12 | 42.7 |
| Os02t0511400-01 | Rice | endoplasmic reticulum, golgi | 42.93 | 40.0 |
| Os03t0842900-01 | Rice | plastid | 35.87 | 37.18 |
| Os11t0265400-01 | Rice | plasma membrane | 22.83 | 25.61 |
Protein Annotations
| Gene3D:3.40.50.720 | EntrezGene:4335678 | MapMan:5.9.4 | EMBL:AK107261 | ProteinID:BAF14556.1 | ProteinID:BAS88964.1 |
| ProteinID:CAD40535.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 |
| GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | EnsemblPlantsGene:Os04g0390700 | EnsemblPlants:Os04t0390700-01 | PFAM:PF00106 | PRINTS:PR00080 |
| PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR43391 | PANTHER:PTHR43391:SF29 | UniProt:Q7XVN6 | InterPro:SDR_fam |
| SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | UniParc:UPI00001B12D7 | RefSeq:XP_015635002.1 | SEG:seg | : |
Description
endosperm-specific gene 62Short-chain dehydrogenase/reductase SDR domain containing protein. (Os04t0390700-01)
Coordinates
chr4:+:19233125..19235143
Molecular Weight (calculated)
39664.5 Da
IEP (calculated)
9.369
GRAVY (calculated)
-0.013
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: METLSMLKVG YTLLRSETPA TDLVNAFMDW AARRSLLLLA VFVPPYLAYR LASSALAAAS PEDVAGKVVL VTGASSGIGE QVAYRYARRG ARLALVARRE
101: ASLGEVAARA RALGSPDVLA VPGDVARPDD CRRFVQATVE HFGRLDHLVN NAGLANVCWF EEVPDVANFK QVLDVNFWGT VHPTHAALPH LKASRGKIFV
201: NSSASAVLAM PRMSFYNASK AAVHNFAETL RMELHGEVGV TVATPGWVDS EMTKGKHLSS HGAMEVDQDT RDAQVGVFPV ERGERCAEAI VDAVARGRRR
301: VTSPAWYGAL FLWRTMAPEV ADACQRVFYH RRSSAAGGGG RARAALEATG AKAVLQPPSL RSSEIKVE
101: ASLGEVAARA RALGSPDVLA VPGDVARPDD CRRFVQATVE HFGRLDHLVN NAGLANVCWF EEVPDVANFK QVLDVNFWGT VHPTHAALPH LKASRGKIFV
201: NSSASAVLAM PRMSFYNASK AAVHNFAETL RMELHGEVGV TVATPGWVDS EMTKGKHLSS HGAMEVDQDT RDAQVGVFPV ERGERCAEAI VDAVARGRRR
301: VTSPAWYGAL FLWRTMAPEV ADACQRVFYH RRSSAAGGGG RARAALEATG AKAVLQPPSL RSSEIKVE
001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
Arabidopsis Description
HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.