Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 4
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G565600.1 | Wheat | extracellular, plasma membrane | 84.24 | 84.24 |
| EER99787 | Sorghum | endoplasmic reticulum | 83.67 | 83.91 |
| TraesCS5B01G559400.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 83.67 | 83.67 |
| Zm00001d022303_P001 | Maize | endoplasmic reticulum, extracellular, plastid | 83.67 | 83.67 |
| TraesCS4A01G319700.2 | Wheat | extracellular, golgi | 80.23 | 83.58 |
| Os04t0390700-01 | Rice | plastid | 53.3 | 50.54 |
| Os04t0390800-01 | Rice | plastid | 44.13 | 42.66 |
| Os11t0499600-01 | Rice | endoplasmic reticulum, golgi | 42.41 | 41.81 |
| Os02t0511100-00 | Rice | endoplasmic reticulum, golgi | 42.12 | 40.5 |
| Os02t0511400-01 | Rice | endoplasmic reticulum, golgi | 42.69 | 37.72 |
| Os03t0842900-01 | Rice | plastid | 37.82 | 37.18 |
| Os11t0265400-01 | Rice | plasma membrane | 24.64 | 26.22 |
Protein Annotations
| Gene3D:3.40.50.720 | EntrezGene:4352184 | MapMan:5.9.4 | ProteinID:ABA98146.2 | ProteinID:BAT17063.1 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:NAD(P)-bd_dom_sf | EnsemblPlantsGene:Os12g0464400 | EnsemblPlants:Os12t0464400-01 | PFAM:PF00106 |
| PRINTS:PR00080 | PRINTS:PR00081 | PANTHER:PTHR43391 | PANTHER:PTHR43391:SF29 | UniProt:Q2QRE6 | InterPro:SDR_fam |
| SMART:SM00822 | SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI0000D89DA6 | RefSeq:XP_015618890.1 | SEG:seg |
Description
endosperm-specific gene 150, Dehydrogenase/reductaseSimilar to Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed. (Os12t0464400-01)
Coordinates
chr12:+:16398248..16400772
Molecular Weight (calculated)
38996.9 Da
IEP (calculated)
7.163
GRAVY (calculated)
-0.038
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDLVNGVLN WVATPAMVAS LLLFYPPYYL FKTVHSFLSY LFPDDLARKV VLITGASSGI GEQLAYNYAL NRASLVLVAR REWSLRKVAD QAFELGAPDV
101: IILPGDVANP EDCKRFVQTA IDHYGRLDHL VCNAGIASVG AFQEIPDVTN YSSQFDVNFW GSVQSTFEAL PHLKRSRGRI VVTASATGWN PVPRMTFYNA
201: ANAALINFYE TLRTELGSQV GITIVTPGWI ESEMSKGKFL KDHGEMEVDQ EMRDAQIGLF PVEYAKNCAK AMVQAVRQGK RCLTVPPWFS TMYLWRVFAP
301: EVVEFCYRLL YMHRHGGSQA DAPSKKMAEA GGKKLLYPTS LRSDDIKDE
101: IILPGDVANP EDCKRFVQTA IDHYGRLDHL VCNAGIASVG AFQEIPDVTN YSSQFDVNFW GSVQSTFEAL PHLKRSRGRI VVTASATGWN PVPRMTFYNA
201: ANAALINFYE TLRTELGSQV GITIVTPGWI ESEMSKGKFL KDHGEMEVDQ EMRDAQIGLF PVEYAKNCAK AMVQAVRQGK RCLTVPPWFS TMYLWRVFAP
301: EVVEFCYRLL YMHRHGGSQA DAPSKKMAEA GGKKLLYPTS LRSDDIKDE
001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
Arabidopsis Description
HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.