CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022303_P001	Maize	endoplasmic reticulum, extracellular, plastid	92.53	92.26
Os12t0464400-01	Rice	plastid	83.91	83.67
TraesCS5D01G565600.1	Wheat	extracellular, plasma membrane	83.05	82.81
TraesCS5B01G559400.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	82.47	82.23
TraesCS4A01G319700.2	Wheat	extracellular, golgi	79.02	82.09
OQU81408	Sorghum	extracellular, golgi, vacuole	47.13	46.72
EES05127	Sorghum	endoplasmic reticulum, golgi	43.97	42.38
EES08518	Sorghum	golgi, vacuole	41.38	40.45
KXG38108	Sorghum	plastid	45.11	39.35
KXG37163	Sorghum	endoplasmic reticulum	39.37	35.96
KXG28278	Sorghum	endoplasmic reticulum	25.57	26.89

Protein Annotations

EnsemblPlants:EER99787	EnsemblPlantsGene:SORBI_3002G393100	EntrezGene:8073089	Gene3D:3.40.50.720	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR43391	PANTHER:PTHR43391:SF29	PFAM:PF00106
PRINTS:PR00081	ProteinID:EER99787	ProteinID:EER99787.1	RefSeq:XP_002463266.1	SEG:seg	SUPFAM:SSF51735
TMHMM:TMhelix	unigene:Sbi.12054	UniParc:UPI0001A83EA8	UniProt:C5X3D8	MapMan:5.9.4	:

Description

hypothetical protein

Coordinates

chr2:-:74592120..74594652

Molecular Weight (calculated)

38653.4 Da

IEP (calculated)

6.864

GRAVY (calculated)

-0.027

Length

348 amino acids

Sequence
(BLAST)

001: MDLVNGVLNW VGTPAMVACL LLFYPPYYLF KTCYSFLSWL FPEDLAGKVV LITGASSGIG EQLAYQYALK RASLALVARR ESSLRHVADR ALELGARDVI
101: VLPGDVSAPD DCNRFVQTAI SHYDRLDHLV CNAGIASVGA FQEIPDVTKY SSQLDVNFWG SVQTTFAALP HLKRSRGRIV VTASATGWNP VPRMSFYNAA
201: NAALINFFET LRTELGNQVG ITVVTPGWIE SEMSKGKYLK EHGEVEVDQE MRDAQIGLFP VEYAKNCAKA MVQAAQQGER YLTVPAWFRP MYLWRVFAPE
301: VVEACYRLLY MHGHGARQAD TASRTMADSG GKQLLYPTSL RSEEIKSD

Best Arabidopsis Sequence Match ( AT5G50600.1 )
(BLAST)

001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD

Arabidopsis Description

HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.