CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007345_P001	Maize	golgi, vacuole	92.98	92.2
Zm00001d049161_P001	Maize	golgi, vacuole	89.89	89.64
Os11t0499600-01	Rice	endoplasmic reticulum, golgi	89.04	89.55
TraesCS5A01G054900.1	Wheat	golgi, vacuole	80.9	85.46
TraesCS5D01G066100.1	Wheat	golgi, vacuole	83.15	84.33
TraesCS5B01G061600.1	Wheat	golgi, vacuole	82.58	84.0
HORVU5Hr1G013510.1	Barley	golgi	83.43	73.33
GSMUA_Achr6P12220_001	Banana	endoplasmic reticulum, plasma membrane	57.87	58.19
EES05127	Sorghum	endoplasmic reticulum, golgi	53.37	52.63
KXG38108	Sorghum	plastid	57.87	51.63
EER99787	Sorghum	endoplasmic reticulum	40.45	41.38
OQU81408	Sorghum	extracellular, golgi, vacuole	40.73	41.31
KXG37163	Sorghum	endoplasmic reticulum	36.8	34.38
KXG28278	Sorghum	endoplasmic reticulum	20.22	21.75

Protein Annotations

Gene3D:3.40.50.720	MapMan:5.9.4	EntrezGene:8078395	UniProt:C5Y2N4	EnsemblPlants:EES08518	ProteinID:EES08518
ProteinID:EES08518.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43391	PANTHER:PTHR43391:SF20	InterPro:SDR_fam
EnsemblPlantsGene:SORBI_3005G121500	SUPFAM:SSF51735	unigene:Sbi.11158	InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI0001A8636E
RefSeq:XP_002449530.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:53534101..53541616

Molecular Weight (calculated)

38788.2 Da

IEP (calculated)

9.351

GRAVY (calculated)

0.249

Length

356 amino acids

Sequence
(BLAST)

001: MSKECVVNAL LSCFMHVGLA LVLLVYLPIA FIGRLLKRLF VRPFAKGEDL RGKVVLVTGA SSGIGEHLVY EYARHGACVA VVARTEIALR AVAKTARDLG
101: APDVLVVPAD ITKVDDAKRA VEETVAHFGK LNHLVANAGI WSSCFFEEIT NITAFHNVID LNFWGAVYPT YFALPYLKAS RGNIVVTASV AGRVPTARMS
201: FYNASKGAVI RFYETLRAEL GSHVRVTILM PGYVVSNLTK GKGLQKDGHV GIDEEARDIN VGPMPVGKTE SLAEVVVASV RRGDYYVTWP GWYWPFHMVM
301: CAAPELLDWF SRAFYVSKSG EQDGGAALSK KILEAVGGKK FLYPSTIRSQ TAIAAN

Best Arabidopsis Sequence Match ( AT5G50600.1 )
(BLAST)

001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD

Arabidopsis Description

HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.