Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G559400.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 96.85 | 96.85 |
| TraesCS4A01G319700.2 | Wheat | extracellular, golgi | 91.69 | 95.52 |
| Os12t0464400-01 | Rice | plastid | 84.24 | 84.24 |
| EER99787 | Sorghum | endoplasmic reticulum | 82.81 | 83.05 |
| Zm00001d022303_P001 | Maize | endoplasmic reticulum, extracellular, plastid | 81.09 | 81.09 |
| TraesCS2D01G283900.1 | Wheat | plastid | 54.15 | 51.36 |
| TraesCS2D01G284000.2 | Wheat | plasma membrane, vacuole | 45.85 | 45.58 |
| TraesCS5D01G066100.1 | Wheat | golgi, vacuole | 43.55 | 43.3 |
| TraesCS5D01G529200.1 | Wheat | endoplasmic reticulum, vacuole | 36.39 | 32.82 |
| TraesCS4D01G081900.1 | Wheat | vacuole | 24.07 | 25.69 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G565600.1 | EnsemblPlantsGene:TraesCS5D01G565600 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | PANTHER:PTHR43391 |
| PANTHER:PTHR43391:SF29 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | SEG:seg | SUPFAM:SSF51735 |
| TMHMM:TMhelix | MapMan:5.9.4 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:563965630..563967393
Molecular Weight (calculated)
38645.3 Da
IEP (calculated)
6.249
GRAVY (calculated)
-0.019
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLVNGALNW AAMPAMVASL LLFYPPYYLF KLCYSFLSYL FPDDLKRKVV LITGASSGIG EQLAYQYATK GACLALLARR EWSLRQVADR AFELGAPDVI
101: ILPGDVADPD DCNRFVQATI DHYGRLDHLV CNAGIASVGA FQEIPDVTNY SPQLDVNFWG AVQSTFAALP HLKRTRGRIV VTASATGWNP VPRMVFYNAA
201: NAALINFFET LRSELGSEVG ITIVTPGWIE SEMSKGKFLK EHGGVEVDQE YRDAQIGLFP VEYAKNCARA MVQAARQGDR YLTVPSWFGT MYLWRVFAPE
301: VVEFCYRLLY MHGHGGGDQT DAPSKTMAQG GGKQMLYPSS LRSSDVKND
101: ILPGDVADPD DCNRFVQATI DHYGRLDHLV CNAGIASVGA FQEIPDVTNY SPQLDVNFWG AVQSTFAALP HLKRTRGRIV VTASATGWNP VPRMVFYNAA
201: NAALINFFET LRSELGSEVG ITIVTPGWIE SEMSKGKFLK EHGGVEVDQE YRDAQIGLFP VEYAKNCARA MVQAARQGDR YLTVPSWFGT MYLWRVFAPE
301: VVEFCYRLLY MHGHGGGDQT DAPSKTMAQG GGKQMLYPSS LRSSDVKND
001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
Arabidopsis Description
HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.