Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G565600.1 | Wheat | extracellular, plasma membrane | 95.52 | 91.69 |
| TraesCS5B01G559400.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 94.63 | 90.83 |
| Os12t0464400-01 | Rice | plastid | 83.58 | 80.23 |
| EER99787 | Sorghum | endoplasmic reticulum | 82.09 | 79.02 |
| Zm00001d022303_P001 | Maize | endoplasmic reticulum, extracellular, plastid | 80.3 | 77.08 |
| TraesCS2A01G285000.1 | Wheat | cytosol, golgi, peroxisome, plastid | 54.63 | 49.73 |
| TraesCS5A01G054900.1 | Wheat | golgi, vacuole | 43.28 | 43.03 |
| TraesCS2A01G285100.1 | Wheat | mitochondrion | 47.16 | 38.92 |
| TraesCS4A01G343700.1 | Wheat | endoplasmic reticulum, vacuole | 37.31 | 32.13 |
| TraesCS4A01G232000.1 | Wheat | vacuole | 24.18 | 24.77 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G319700.2 | EnsemblPlantsGene:TraesCS4A01G319700 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | PANTHER:PTHR43391 |
| PANTHER:PTHR43391:SF29 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | SEG:seg | SUPFAM:SSF51735 |
| TMHMM:TMhelix | MapMan:5.9.4 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:608560859..608562705
Molecular Weight (calculated)
36982.4 Da
IEP (calculated)
5.691
GRAVY (calculated)
0.056
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLVNGVLNW AAMPAMVTTL LLLYPPYYLF KLCYSFLSYL FPDDLKRKVV LITGASSGIG EQLAYQYATK GACLALVARR EWSLRQVADR AFELGAPDVI
101: ILPGDVADPD DCNRFVQAAV DHFGRLDHLV CNAGIASVGA FQEIPDVTNY SSQLDVNFWG AVQSTFAALP HLKRTRGRIV VTASATGWNP VPCMVFYNAA
201: NAALINFFET LRSELGSEVG ITIVTPGWIE SEMSKGKFLK EDGGVEVDQE YRDAQIGLFP VEYAKKCARA MVQAARQGDR YLTVPSWFGT MYLWRVFAPE
301: VVEFCYRLLY MHGHGGGDQT DAPSKTMAQG GTPPR
101: ILPGDVADPD DCNRFVQAAV DHFGRLDHLV CNAGIASVGA FQEIPDVTNY SSQLDVNFWG AVQSTFAALP HLKRTRGRIV VTASATGWNP VPCMVFYNAA
201: NAALINFFET LRSELGSEVG ITIVTPGWIE SEMSKGKFLK EDGGVEVDQE YRDAQIGLFP VEYAKKCARA MVQAARQGDR YLTVPSWFGT MYLWRVFAPE
301: VVEFCYRLLY MHGHGGGDQT DAPSKTMAQG GTPPR
001: MDSINKIINF LFPLLTLYAL LVFYPTYQRL KSAVSICRNL FSENVAGKVV VITGAASGIG EALAYEYGKR GAYLALVDIR GEPLFHVAAL AELYGSPEVL
101: PLVADVSKLQ DCERFIRATV LHFGRLDHLV TNAGVAPLYF FADIEDVSKA SPAMDINFWG SVYCTFFASP YLKKFRGRIV VIASGCGYIA SPRLSFYCAS
201: KAAVIAFYET LRTEFGSDIG VTIVAPGIVD SEMSRGKFMT KDGKLVVDKE LRDVQMSVLP VESAERCAKA IMRSVCRGDR YLLEPDWIGC VILLKVFCSE
301: ATEWVARWLL IARPKFPMME ALSNKILDVA HAFNSFFSFP HY
101: PLVADVSKLQ DCERFIRATV LHFGRLDHLV TNAGVAPLYF FADIEDVSKA SPAMDINFWG SVYCTFFASP YLKKFRGRIV VIASGCGYIA SPRLSFYCAS
201: KAAVIAFYET LRTEFGSDIG VTIVAPGIVD SEMSRGKFMT KDGKLVVDKE LRDVQMSVLP VESAERCAKA IMRSVCRGDR YLLEPDWIGC VILLKVFCSE
301: ATEWVARWLL IARPKFPMME ALSNKILDVA HAFNSFFSFP HY
Arabidopsis Description
HSD611-beta-hydroxysteroid dehydrogenase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUE4]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.