Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plastid, cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G283900.1 | Wheat | plastid | 96.74 | 96.74 |
| TraesCS2B01G302100.1 | Wheat | cytosol, golgi, peroxisome, plastid | 95.38 | 95.38 |
| Os04t0390700-01 | Rice | plastid | 80.71 | 80.71 |
| HORVU2Hr1G070310.3 | Barley | plastid | 75.82 | 75.41 |
| TraesCS4A01G319700.2 | Wheat | extracellular, golgi | 49.73 | 54.63 |
| TraesCS5A01G054900.1 | Wheat | golgi, vacuole | 41.03 | 44.81 |
| TraesCS2A01G285100.1 | Wheat | mitochondrion | 46.74 | 42.36 |
| TraesCS4A01G343700.1 | Wheat | endoplasmic reticulum, vacuole | 38.04 | 35.99 |
| TraesCS4A01G232000.1 | Wheat | vacuole | 23.64 | 26.61 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G285000.1 | EnsemblPlantsGene:TraesCS2A01G285000 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | InterPro:Sc_DH/Rdtase_CS | PANTHER:PTHR43391 |
| PANTHER:PTHR43391:SF29 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | SEG:seg |
| SMART:SM00822 | SUPFAM:SSF51735 | MapMan:5.9.4 | : | : | : |
Description
No Description!
Coordinates
chr2A:+:478901496..478903124
Molecular Weight (calculated)
40233.7 Da
IEP (calculated)
9.515
GRAVY (calculated)
-0.006
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMLSMLKVG YTVLRSETPA TDLVNTFMDW AARRSLLLLA LFMPPYHVYK LAASAAATVA PEDVAGKVVL VTGASSGIGE QIAYQYAKKG ARLALVARRQ
101: GSLHEVAAKA TDLGSPDVLV VPGDVARPED CKAFVQATVE RFGRLDHLVN NAGLANVCWF EEVPDVAGFK QVLDVNFWGT VHPTHAALPH LKRSRGKIFV
201: NSSAAAVLAM PRMSFYNASK AAVLSFAETL RMELGDEVGV TVATPGWIES EMTKGKHLSK EGRVEVDQDT RDAQVGLFPV VRAERCAEAI VDAVCRGRRS
301: VTVPLWYRAL FLWRSLAPEV GDVLQRMFYR RSSGDGGSQM RARRVLEVTG AKRVLQPPSL HTADIKRE
101: GSLHEVAAKA TDLGSPDVLV VPGDVARPED CKAFVQATVE RFGRLDHLVN NAGLANVCWF EEVPDVAGFK QVLDVNFWGT VHPTHAALPH LKRSRGKIFV
201: NSSAAAVLAM PRMSFYNASK AAVLSFAETL RMELGDEVGV TVATPGWIES EMTKGKHLSK EGRVEVDQDT RDAQVGLFPV VRAERCAEAI VDAVCRGRRS
301: VTVPLWYRAL FLWRSLAPEV GDVLQRMFYR RSSGDGGSQM RARRVLEVTG AKRVLQPPSL HTADIKRE
001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
Arabidopsis Description
HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.