Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G565600.1 | Wheat | extracellular, plasma membrane | 96.85 | 96.85 |
| TraesCS4A01G319700.2 | Wheat | extracellular, golgi | 90.83 | 94.63 |
| Os12t0464400-01 | Rice | plastid | 83.67 | 83.67 |
| EER99787 | Sorghum | endoplasmic reticulum | 82.23 | 82.47 |
| Zm00001d022303_P001 | Maize | endoplasmic reticulum, extracellular, plastid | 79.94 | 79.94 |
| TraesCS2B01G302200.1 | Wheat | plasma membrane, vacuole | 37.54 | 52.82 |
| TraesCS2B01G302100.1 | Wheat | cytosol, golgi, peroxisome, plastid | 54.15 | 51.36 |
| TraesCS5B01G061600.1 | Wheat | golgi, vacuole | 42.98 | 42.86 |
| TraesCS5B01G530500.1 | Wheat | endoplasmic reticulum | 35.82 | 32.3 |
| TraesCS4B01G084000.1 | Wheat | vacuole | 24.07 | 25.69 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G559400.1 | EnsemblPlantsGene:TraesCS5B01G559400 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | PANTHER:PTHR43391 |
| PANTHER:PTHR43391:SF29 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | SEG:seg | SUPFAM:SSF51735 |
| TMHMM:TMhelix | MapMan:5.9.4 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:706347162..706348903
Molecular Weight (calculated)
38545.2 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.014
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLVNGALNW AAMPAMVAAL LLFYPPYYLF KLCYSFLSYL FPDDLKRKVV LITGASSGIG EQLAYQYAAK GACLALVARK EWSLRQVADR AFDLGAPDVI
101: ILPGDVADPD DCNRFVQATV DHYGRLDHLV CNAGIASVGA FQEIPDVTNY SSQLDVNFWG AVQSTSAALP HLKRTRGRIV VTASATGWNP VPRMIFYNAA
201: NAALINFFET LRSELGSEVG ITIVTPGWIE SEMSKGKFLK EHGGVEVDQE YRDAQIGLFP VEYAKNCARA MVQAARQGDR YLTVPSWFGT MYLWRVFAPE
301: VVEFCYRLLY MHRHGGGDQT DAPSKTMAQG GGKQMLYPSS LRSSDVKSD
101: ILPGDVADPD DCNRFVQATV DHYGRLDHLV CNAGIASVGA FQEIPDVTNY SSQLDVNFWG AVQSTSAALP HLKRTRGRIV VTASATGWNP VPRMIFYNAA
201: NAALINFFET LRSELGSEVG ITIVTPGWIE SEMSKGKFLK EHGGVEVDQE YRDAQIGLFP VEYAKNCARA MVQAARQGDR YLTVPSWFGT MYLWRVFAPE
301: VVEFCYRLLY MHRHGGGDQT DAPSKTMAQG GGKQMLYPSS LRSSDVKSD
001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
Arabidopsis Description
HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.