Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G25550.1 | CDX73342 | AT1G35670.1 | 19130088 |
| AT1G25550.1 | CDY37101 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51129 | Canola | nucleus | 91.82 | 94.69 |
| AT1G25550.1 | Thale cress | nucleus | 70.61 | 67.73 |
| CDX81535 | Canola | nucleus | 52.73 | 50.73 |
| CDY54503 | Canola | nucleus | 55.45 | 49.73 |
| CDY38609 | Canola | nucleus | 53.64 | 49.03 |
| CDX95998 | Canola | nucleus | 52.73 | 48.47 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 49.39 | 45.79 |
| CDY04180 | Canola | nucleus | 45.45 | 44.51 |
| CDY50179 | Canola | nucleus | 46.67 | 44.51 |
| CDY21091 | Canola | nucleus | 46.36 | 44.22 |
| CDY39188 | Canola | nucleus | 45.45 | 43.1 |
| CDY19382 | Canola | nucleus | 43.64 | 42.35 |
| CDX83554 | Canola | nucleus | 45.15 | 42.09 |
| CDY16075 | Canola | nucleus | 44.24 | 41.83 |
| CDX97993 | Canola | nucleus | 43.64 | 41.74 |
| CDY13584 | Canola | nucleus | 44.85 | 41.46 |
| KRH70595 | Soybean | nucleus | 46.06 | 40.97 |
| PGSC0003DMT400002162 | Potato | nucleus | 45.76 | 40.16 |
| KRH75476 | Soybean | nucleus | 45.76 | 39.84 |
| Solyc05g009720.2.1 | Tomato | nucleus | 48.18 | 39.75 |
| GSMUA_Achr10P... | Banana | nucleus | 36.97 | 39.35 |
| KRG92028 | Soybean | nucleus | 45.15 | 39.11 |
| KRH34759 | Soybean | nucleus | 44.55 | 38.38 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 42.73 | 38.01 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 39.09 | 37.94 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 29.7 | 36.98 |
| GSMUA_Achr11P... | Banana | nucleus | 40.3 | 36.04 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 39.7 | 35.12 |
| Os02t0325600-01 | Rice | nucleus | 43.64 | 34.95 |
| CDY40421 | Canola | nucleus | 16.67 | 33.74 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 31.21 | 33.44 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 40.0 | 32.84 |
| CDY44057 | Canola | nucleus | 31.21 | 32.09 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 33.64 | 31.71 |
| CDX69259 | Canola | nucleus | 30.91 | 31.68 |
| CDY72117 | Canola | nucleus | 17.27 | 31.15 |
| CDY59732 | Canola | nucleus | 23.94 | 30.86 |
| EES15678 | Sorghum | nucleus | 43.03 | 30.74 |
| Zm00001d023411_P001 | Maize | nucleus | 42.12 | 30.68 |
| CDY42715 | Canola | nucleus | 27.27 | 30.61 |
| Zm00001d023402_P001 | Maize | nucleus | 41.52 | 29.85 |
| CDX75610 | Canola | nucleus | 29.39 | 29.85 |
| TraesCS2A01G116100.2 | Wheat | plastid | 40.91 | 28.42 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 13.33 | 26.67 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 40.3 | 25.73 |
| CDY51048 | Canola | nucleus | 23.33 | 25.58 |
| CDY70722 | Canola | nucleus | 23.03 | 24.76 |
| CDY51214 | Canola | nucleus | 30.91 | 24.11 |
| CDY02988 | Canola | nucleus | 30.91 | 24.11 |
| CDY71327 | Canola | nucleus | 24.24 | 23.95 |
| CDY71874 | Canola | nucleus | 25.45 | 23.27 |
| CDY22459 | Canola | nucleus | 28.48 | 23.1 |
| CDX69206 | Canola | nucleus | 10.91 | 23.08 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 11.21 | 18.32 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078G6E3 | UniProt:A0A078G6E3 | EnsemblPlants:CDY20522 | ProteinID:CDY20522 |
| ProteinID:CDY20522.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00012634001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31003 | PANTHER:PTHR31003:SF4 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE3D65 |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g11890DBnaC07g11890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6E3]
Coordinates
chrLK032109:+:1130..2785
Molecular Weight (calculated)
37445.2 Da
IEP (calculated)
8.215
GRAVY (calculated)
-0.892
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKGDNMDY TLKKKRCEEY IEALEEEQKK IQVFKRELPL CLSLVTQAIE SYWKELSEFS RSEHIQSEGS ERTTSEFEGR DGCIALSEEF VPIKSCERVK
101: DDEAENNVDK KKSEWLQLWN QSPDPQPIED QTTTVVAAEV NENCGAFQPF QKGKLAYSQP LKAITPTPKA SSSTAETGGN KKEMEQQKQL QMHRKQRRCW
201: SSELHRRFLH ALQRLGGSHA ATPKQIRDLM QVDGLTNDEV KSHLQKYRLH TRRPATPTLT NGCESPQQQQ LIVVEGIWVP SKDGVNNRVY APVAVQPPPR
301: SSPSEPRSIQ RCKPPTASSS THPSHLLPLS
101: DDEAENNVDK KKSEWLQLWN QSPDPQPIED QTTTVVAAEV NENCGAFQPF QKGKLAYSQP LKAITPTPKA SSSTAETGGN KKEMEQQKQL QMHRKQRRCW
201: SSELHRRFLH ALQRLGGSHA ATPKQIRDLM QVDGLTNDEV KSHLQKYRLH TRRPATPTLT NGCESPQQQQ LIVVEGIWVP SKDGVNNRVY APVAVQPPPR
301: SSPSEPRSIQ RCKPPTASSS THPSHLLPLS
001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS
Arabidopsis Description
HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.