CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91449
KRG91803
KRH11677
KRH34983
KRH34984
KRH35367
KRH36679
KRH44917

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	KRG91803	AT1G35670.1	19130088
AT1G25550.1	KRH34983	AT1G35670.1	19130088
AT1G25550.1	KRH34984	AT1G35670.1	19130088
AT1G68670.1	KRH44917	AT1G22630.1	21798944
AT1G68670.1	KRG91449	AT2G04630.1	21798944
AT1G68670.1	KRH35367	AT2G04630.1	21798944
AT1G68670.1	KRH11677	AT3G52155.1	21798944
AT1G68670.1	KRH36679	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92028	Soybean	nucleus	89.56	90.03
KRH70595	Soybean	nucleus	59.79	61.73
KRH75476	Soybean	nucleus	60.84	61.48
VIT_01s0011g03110.t01	Wine grape	nucleus	54.31	58.43
PGSC0003DMT400002162	Potato	nucleus	52.74	53.72
Solyc05g009720.2.1	Tomato	nucleus	53.0	50.75
AT1G25550.1	Thale cress	nucleus	43.6	48.55
AT1G68670.1	Thale cress	nucleus	43.86	47.46
CDX81535	Canola	nucleus	41.51	46.36
CDY54503	Canola	nucleus	44.13	45.92
Bra038360.1-P	Field mustard	nucleus	43.86	45.65
CDY51129	Canola	nucleus	38.12	45.62
CDY38609	Canola	nucleus	42.04	44.6
CDX95998	Canola	nucleus	41.78	44.57
Bra004330.1-P	Field mustard	nucleus	41.78	44.57
CDY20522	Canola	nucleus	38.38	44.55
GSMUA_Achr10P...	Banana	nucleus	35.51	43.87
GSMUA_Achr6P09870_001	Banana	nucleus	38.38	43.24
GSMUA_Achr3P21090_001	Banana	nucleus	41.51	42.63
GSMUA_Achr8P18270_001	Banana	nucleus	40.73	42.05
Bra012471.1-P	Field mustard	nucleus	36.03	41.95
GSMUA_Achr11P...	Banana	nucleus	39.95	41.46
Os02t0325600-01	Rice	nucleus	42.04	39.08
GSMUA_Achr1P23220_001	Banana	nucleus	26.37	38.11
TraesCS2D01G119100.1	Wheat	nucleus	38.64	36.82
TraesCS2B01G135600.1	Wheat	nucleus	32.64	35.71
Zm00001d023411_P001	Maize	nucleus	40.47	34.22
Zm00001d023402_P001	Maize	nucleus	40.73	33.99
EES15678	Sorghum	nucleus	40.99	33.98
GSMUA_Achr4P03680_001	Banana	nucleus	25.33	31.49
TraesCS2A01G116100.2	Wheat	plastid	38.38	30.95
KRG89233	Soybean	nucleus	28.46	29.62
KRH49770	Soybean	nucleus	27.68	28.88
HORVU2Hr1G020140.3	Barley	nucleus, plastid	38.9	28.82
KRH50234	Soybean	nucleus	30.55	28.4
KRH71185	Soybean	nucleus	30.55	28.26
KRH56661	Soybean	nucleus	33.16	27.97
GSMUA_Achr4P13650_001	Banana	plastid	12.01	27.88
KRH03776	Soybean	nucleus	32.9	27.88
KRH54846	Soybean	nucleus	33.94	27.84
KRH28514	Soybean	nucleus	24.54	27.49
KRH63037	Soybean	nucleus	32.9	27.27
KRH76947	Soybean	nucleus	25.07	26.16
KRH04674	Soybean	nucleus	23.76	24.93

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100796683	MapMan:15.5.2.3	EMBL:ACUP02006626	EnsemblPlantsGene:GLYMA_10G204200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1LCS9	InterPro:IPR017930	EnsemblPlants:KRH34759
ProteinID:KRH34759	ProteinID:KRH34759.1	EMBL:KT031196	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF4	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI0001BA8C54	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:43534042..43537388

Molecular Weight (calculated)

42241.0 Da

IEP (calculated)

6.764

GRAVY (calculated)

-0.764

Length

383 amino acids

Sequence
(BLAST)

001: MYFFTEKMHS LKMGFPDYIQ TLEEERRKIQ VFSKELPLSL ELVTQAIEAC KQQLSGTASE YNLNGHSECS EQTTSTEGPV LEEFIPIKKM ASSSPFCDEE
101: DEDDEQHSHK QRVSKENNNS DKRKSDWLRS VQLWNPDPPA EEDVNKKVPG LELKRSGNGG GAFQPFHKEE RGAKTSESLS KAPSSTSVAA ASSSAAEPAA
201: EKSLNEGHRK QRRCWSQDLH KRFLHALQQL GGADTATPKQ IREIMNVDGL TNDEVKSHLQ KYRLHTRRPS PMVHNSSNPQ AAPFVLVGNI FVQSPEYAAV
301: ATSTASREVA TVAAPAGIYA PVATHPIPVS HPPADSIKNP QFKKVQLFEH SISDERANHS EGAVHSNSPT SSSSTHTSTS LGY

Best Arabidopsis Sequence Match ( AT1G25550.1 )
(BLAST)

001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS

Arabidopsis Description

HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.