Factsheet for GSMUA_Achr11P13410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr3P18200_001
GSMUA_Achr4P27190_001
GSMUA_Achr5P04520_001
GSMUA_Achr6P25560_001
GSMUA_Achr8P29370_001
GSMUA_Achr9P08680_001
GSMUA_Achr9P13230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088
AT1G68670.1	GSMUA_Achr8P29370_001	AT1G22630.1	21798944
AT1G68670.1	GSMUA_Achr3P18200_001	AT2G04630.1	21798944
AT1G68670.1	GSMUA_Achr4P27190_001	AT2G04630.1	21798944
AT1G68670.1	GSMUA_Achr5P04520_001	AT3G05530.1	21798944
AT1G68670.1	GSMUA_Achr9P13230_001	AT3G05530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P21090_001	Banana	nucleus	55.83	55.23
GSMUA_Achr8P18270_001	Banana	nucleus	55.01	54.72
GSMUA_Achr6P09870_001	Banana	nucleus	50.14	54.41
GSMUA_Achr10P...	Banana	nucleus	42.55	50.65
VIT_01s0011g03110.t01	Wine grape	nucleus	47.97	49.72
Os02t0325600-01	Rice	nucleus	51.76	46.36
TraesCS2B01G135600.1	Wheat	nucleus	43.09	45.43
AT1G25550.1	Thale cress	nucleus	41.73	44.77
TraesCS2D01G119100.1	Wheat	nucleus	48.51	44.53
AT1G68670.1	Thale cress	nucleus	42.55	44.35
PGSC0003DMT400002162	Potato	nucleus	44.99	44.15
CDX81535	Canola	nucleus	40.11	43.15
CDX95998	Canola	nucleus	41.19	42.34
Solyc05g009720.2.1	Tomato	nucleus	45.8	42.25
Bra038360.1-P	Field mustard	nucleus	41.73	41.85
Bra004330.1-P	Field mustard	nucleus	40.65	41.78
CDY54503	Canola	nucleus	41.46	41.58
CDY38609	Canola	nucleus	40.38	41.27
CDY51129	Canola	nucleus	35.77	41.25
AT3G25790.1	Thale cress	nucleus	39.57	40.9
AT1G13300.1	Thale cress	nucleus	37.67	40.41
CDX83554	Canola	nucleus	38.75	40.4
GSMUA_Achr1P23220_001	Banana	nucleus	29.0	40.38
CDY13584	Canola	nucleus	39.02	40.34
CDY20522	Canola	nucleus	36.04	40.3
KRH34759	Soybean	nucleus	41.46	39.95
Bra025161.1-P	Field mustard	nucleus	40.92	39.95
KRG92028	Soybean	nucleus	40.65	39.37
CDY50179	Canola	nucleus	36.86	39.31
CDY21091	Canola	nucleus	36.86	39.31
Bra016734.1-P	Field mustard	nucleus	36.86	39.31
CDY04180	Canola	nucleus	35.77	39.17
CDY39188	Canola	nucleus	36.86	39.08
EES15678	Sorghum	nucleus	48.78	38.96
Zm00001d023411_P001	Maize	nucleus	47.7	38.85
CDY16075	Canola	nucleus	36.59	38.68
Zm00001d023402_P001	Maize	nucleus	47.97	38.56
CDY19382	Canola	nucleus	35.5	38.53
KRH75476	Soybean	nucleus	39.57	38.52
KRH70595	Soybean	nucleus	38.48	38.27
Bra017349.1-P	Field mustard	nucleus	37.13	38.27
Bra012471.1-P	Field mustard	nucleus	33.88	37.99
CDX97993	Canola	nucleus	35.5	37.97
TraesCS2A01G116100.2	Wheat	plastid	47.97	37.26
Bra019824.1-P	Field mustard	nucleus	36.59	36.99
HORVU2Hr1G020140.3	Barley	nucleus, plastid	49.86	35.59
GSMUA_Achr4P03680_001	Banana	nucleus	29.54	35.39
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	27.64	30.54
GSMUA_Achr4P13650_001	Banana	plastid	13.28	29.7
GSMUA_Achr7P00660_001	Banana	nucleus	27.1	29.5
GSMUA_Achr10P...	Banana	nucleus	31.44	29.07
GSMUA_Achr6P05330_001	Banana	nucleus	32.79	28.67
GSMUA_Achr4P28210_001	Banana	nucleus	24.66	28.26
GSMUA_Achr4P32500_001	Banana	nucleus	25.47	27.65
GSMUA_Achr10P...	Banana	nucleus	28.73	27.32
GSMUA_Achr9P26570_001	Banana	nucleus	28.73	27.04
GSMUA_Achr6P34680_001	Banana	nucleus	27.64	26.91
GSMUA_Achr2P13380_001	Banana	nucleus	26.56	26.78
GSMUA_Achr10P...	Banana	nucleus	28.18	26.6
GSMUA_Achr6P00650_001	Banana	nucleus	26.83	26.12
GSMUA_Achr4P23210_001	Banana	nucleus	26.29	26.08

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr11G13410_001
EnsemblPlants:GSMUA_Achr11P13410_001	EnsemblPlants:GSMUA_Achr11T13410_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0RRX1	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF16	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000294DC2F	SEG:seg	:	:

Description

MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G13410_001]

Coordinates

chr11:+:14022914..14025066

Molecular Weight (calculated)

39679.4 Da

IEP (calculated)

9.250

GRAVY (calculated)

-0.645

Length

369 amino acids

Sequence
(BLAST)

001: MDFSATLPSC GDYVRALEEE RKKIQVFQRE LPLCLQIVTH AIDSARRQMN GHATMSEDGP ILEEFIPLKP SSSSSEDRSV DGAAKKSGSA ATRADEKPDW
101: LRSVQLWNQE ADAFGKVEPP TKPIAVNARR IGGAFHPFER EKHVAAPIPA SSSTTSGKGG VGGSGVGGEE KEKEGQSQPH RKARRCWSPE LHQRFLHALK
201: QLGGSHVATP KQIRELMKVD GLTNDEVKSH LQKYRLHNRR PSTAVHSSSS NTTNPPIPQF VVVSGIWVPP PDYTVAAPPA DAPCTPAVGV FAPAASLPSD
301: SRVRPQQSKQ SDRSPTGPQL EKGGRSEESN SSGNAAAFNS LSPAASSSSQ TTTASHLEIT CKSFMVGRQ

Best Arabidopsis Sequence Match ( AT1G25550.1 )
(BLAST)

001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS

Arabidopsis Description

HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.