Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81535 | Canola | nucleus | 72.88 | 75.22 |
| Bra038360.1-P | Field mustard | nucleus | 77.4 | 74.46 |
| CDY54503 | Canola | nucleus | 76.84 | 73.91 |
| CDX95998 | Canola | nucleus | 74.29 | 73.26 |
| Bra004330.1-P | Field mustard | nucleus | 73.73 | 72.7 |
| CDY38609 | Canola | nucleus | 73.45 | 72.02 |
| AT1G25550.1 | Thale cress | nucleus | 60.45 | 62.21 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 53.39 | 53.09 |
| PGSC0003DMT400002162 | Potato | nucleus | 51.13 | 48.14 |
| AT1G13300.1 | Thale cress | nucleus | 45.76 | 47.09 |
| KRH70595 | Soybean | nucleus | 49.15 | 46.9 |
| Solyc05g009720.2.1 | Tomato | nucleus | 52.26 | 46.25 |
| KRH75476 | Soybean | nucleus | 48.59 | 45.38 |
| GSMUA_Achr10P... | Banana | nucleus | 39.55 | 45.16 |
| AT3G25790.1 | Thale cress | nucleus | 45.2 | 44.82 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 42.94 | 44.71 |
| KRH34759 | Soybean | nucleus | 47.46 | 43.86 |
| KRG92028 | Soybean | nucleus | 46.61 | 43.31 |
| GSMUA_Achr11P... | Banana | nucleus | 44.35 | 42.55 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 44.35 | 42.09 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 42.66 | 40.7 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 29.1 | 38.87 |
| Os02t0325600-01 | Rice | nucleus | 44.63 | 38.35 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 41.81 | 36.82 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 35.31 | 35.71 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 28.81 | 33.12 |
| Zm00001d023411_P001 | Maize | nucleus | 41.53 | 32.45 |
| EES15678 | Sorghum | nucleus | 42.09 | 32.25 |
| Zm00001d023402_P001 | Maize | nucleus | 41.24 | 31.81 |
| TraesCS2A01G116100.2 | Wheat | plastid | 40.68 | 30.32 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 42.09 | 28.82 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.99 | 27.88 |
| AT4G37180.2 | Thale cress | nucleus | 28.53 | 27.82 |
| AT1G49560.1 | Thale cress | nucleus | 25.99 | 27.63 |
| AT2G03500.1 | Thale cress | nucleus | 30.23 | 24.77 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EntrezGene:843197 | ProteinID:AAD49976.1 | ProteinID:AEE34826.1 | ArrayExpress:AT1G68670 |
| EnsemblPlantsGene:AT1G68670 | RefSeq:AT1G68670 | TAIR:AT1G68670 | RefSeq:AT1G68670-TAIR-G | EnsemblPlants:AT1G68670.1 | TAIR:AT1G68670.1 |
| EMBL:AY063886 | EMBL:AY087993 | EMBL:AY091241 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009987 | GO:GO:0055062 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_564938.1 | PFAM:PF00249 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000252 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020127 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF4 |
| UniProt:Q8VZS3 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI00000AA5B5 | SEG:seg |
Description
HHO2Transcription factor HHO2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS3]
Coordinates
chr1:+:25781801..25784118
Molecular Weight (calculated)
39426.3 Da
IEP (calculated)
7.030
GRAVY (calculated)
-0.769
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MMVEMDYAKK MQKCHEYVEA LEEEQKKIQV FQRELPLCLE LVTQAIEACR KELSGTTTTT SEQCSEQTTS VCGGPVFEEF IPIKKISSLC EEVQEEEEED
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.