Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16075 | Canola | nucleus | 88.08 | 86.82 |
| CDY50179 | Canola | nucleus | 86.92 | 86.42 |
| Bra016734.1-P | Field mustard | nucleus | 84.88 | 84.39 |
| CDY21091 | Canola | nucleus | 84.88 | 84.39 |
| AT3G25790.1 | Thale cress | nucleus | 60.17 | 57.98 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 48.84 | 47.19 |
| AT1G68670.1 | Thale cress | nucleus | 47.09 | 45.76 |
| AT1G25550.1 | Thale cress | nucleus | 45.35 | 45.35 |
| PGSC0003DMT400002162 | Potato | nucleus | 46.8 | 42.82 |
| Solyc05g009720.2.1 | Tomato | nucleus | 47.09 | 40.5 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 40.7 | 37.74 |
| GSMUA_Achr11P... | Banana | nucleus | 40.41 | 37.67 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 36.92 | 37.35 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 28.49 | 36.98 |
| GSMUA_Achr10P... | Banana | nucleus | 32.27 | 35.81 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 38.08 | 35.12 |
| Os02t0325600-01 | Rice | nucleus | 40.12 | 33.5 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 38.66 | 33.08 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 30.23 | 29.71 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 26.45 | 29.55 |
| EES15678 | Sorghum | nucleus | 39.24 | 29.22 |
| Zm00001d023411_P001 | Maize | nucleus | 37.79 | 28.7 |
| Zm00001d023402_P001 | Maize | nucleus | 37.5 | 28.1 |
| TraesCS2A01G116100.2 | Wheat | plastid | 38.08 | 27.58 |
| AT4G37180.2 | Thale cress | nucleus | 28.2 | 26.72 |
| AT1G49560.1 | Thale cress | nucleus | 25.0 | 25.83 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 38.66 | 25.73 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.21 | 25.45 |
| AT2G03500.1 | Thale cress | nucleus | 30.81 | 24.54 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EntrezGene:837890 | UniProt:A0A178W2E4 | ProteinID:AAG09552.1 | ProteinID:AEE28996.1 |
| EMBL:AF367336 | ArrayExpress:AT1G13300 | EnsemblPlantsGene:AT1G13300 | RefSeq:AT1G13300 | TAIR:AT1G13300 | RefSeq:AT1G13300-TAIR-G |
| EnsemblPlants:AT1G13300.1 | TAIR:AT1G13300.1 | EMBL:AY124865 | Unigene:At.20366 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009605 | GO:GO:0009719 | GO:GO:0009788 | GO:GO:0009987 | GO:GO:0009991 | GO:GO:0016036 |
| GO:GO:0032107 | GO:GO:0080022 | GO:GO:1901699 | Symbol:HRS1 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_563926.1 | ProteinID:OAP11871.1 | PFAM:PF00249 | PO:PO:0000256 |
| PO:PO:0009005 | PO:PO:0020100 | PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF16 | UniProt:Q9FX67 |
| InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI000009CBFE | SEG:seg | : |
Description
HRS1Transcription factor HRS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX67]
Coordinates
chr1:+:4556878..4558793
Molecular Weight (calculated)
39059.4 Da
IEP (calculated)
6.450
GRAVY (calculated)
-1.084
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKKFSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKRELPEMT TENMYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE
101: EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH
201: LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW
301: PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN
101: EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH
201: LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW
301: PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.