Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G119100.1 | Wheat | nucleus | 92.86 | 80.85 |
| TraesCS2A01G116100.2 | Wheat | plastid | 92.0 | 67.79 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 93.71 | 63.44 |
| Os02t0325600-01 | Rice | nucleus | 69.43 | 58.98 |
| EES15678 | Sorghum | nucleus | 62.0 | 46.97 |
| Zm00001d023411_P001 | Maize | nucleus | 59.14 | 45.7 |
| Zm00001d023402_P001 | Maize | nucleus | 59.71 | 45.53 |
| GSMUA_Achr11P... | Banana | nucleus | 45.43 | 43.09 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 41.14 | 42.35 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 44.57 | 42.05 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 43.43 | 40.75 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 40.57 | 39.89 |
| PGSC0003DMT400002162 | Potato | nucleus | 42.29 | 39.36 |
| GSMUA_Achr10P... | Banana | nucleus | 34.29 | 38.71 |
| Solyc05g009720.2.1 | Tomato | nucleus | 42.29 | 37.0 |
| AT1G25550.1 | Thale cress | nucleus | 34.86 | 35.47 |
| AT1G68670.1 | Thale cress | nucleus | 35.71 | 35.31 |
| CDY51129 | Canola | nucleus | 31.71 | 34.69 |
| CDX95998 | Canola | nucleus | 35.43 | 34.54 |
| Bra004330.1-P | Field mustard | nucleus | 35.14 | 34.26 |
| CDX81535 | Canola | nucleus | 33.14 | 33.82 |
| CDY20522 | Canola | nucleus | 31.71 | 33.64 |
| CDY38609 | Canola | nucleus | 34.57 | 33.52 |
| CDY54503 | Canola | nucleus | 34.86 | 33.15 |
| Bra038360.1-P | Field mustard | nucleus | 34.57 | 32.88 |
| Bra012471.1-P | Field mustard | nucleus | 30.86 | 32.83 |
| KRG92028 | Soybean | nucleus | 35.71 | 32.81 |
| KRH34759 | Soybean | nucleus | 35.71 | 32.64 |
| CDX83554 | Canola | nucleus | 32.86 | 32.49 |
| KRH75476 | Soybean | nucleus | 35.14 | 32.45 |
| KRH70595 | Soybean | nucleus | 34.29 | 32.34 |
| CDY13584 | Canola | nucleus | 32.57 | 31.93 |
| Bra025161.1-P | Field mustard | nucleus | 34.0 | 31.48 |
| CDY04180 | Canola | nucleus | 30.29 | 31.45 |
| CDY39188 | Canola | nucleus | 30.29 | 30.46 |
| AT1G13300.1 | Thale cress | nucleus | 29.71 | 30.23 |
| CDY16075 | Canola | nucleus | 30.0 | 30.09 |
| AT3G25790.1 | Thale cress | nucleus | 30.57 | 29.97 |
| Bra017349.1-P | Field mustard | nucleus | 30.57 | 29.89 |
| CDY50179 | Canola | nucleus | 28.86 | 29.19 |
| CDY19382 | Canola | nucleus | 28.29 | 29.12 |
| CDX97993 | Canola | nucleus | 28.29 | 28.7 |
| Bra016734.1-P | Field mustard | nucleus | 28.29 | 28.61 |
| CDY21091 | Canola | nucleus | 28.29 | 28.61 |
| Bra019824.1-P | Field mustard | nucleus | 28.0 | 26.85 |
| TraesCS3B01G144100.1 | Wheat | nucleus | 32.29 | 23.94 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 22.29 | 23.35 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 24.29 | 22.55 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 24.57 | 21.39 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0045892 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 |
| PANTHER:PTHR31003:SF16 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | EnsemblPlantsGene:TraesCS2B01G135600 | EnsemblPlants:TraesCS2B01G135600.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:102125791..102127163
Molecular Weight (calculated)
37065.7 Da
IEP (calculated)
6.428
GRAVY (calculated)
-0.756
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAAIEGMKS QMGGAASEET VSDHDGPVLE EFIPLKPSLS LSSSDDETST HAAAPVSNAK AETPPPTPET KKAMPDWLQS AQLSTWSEPQ QSSSLRKVLP
101: CRPVALNATR TGGAFHPFEK EKQPEAELPA SSTTAPASSA LVGDSGDKAT SDTEVHDKDS KDITEKDTDK DKDKEGQSQP NRKPRRCWAP ELHRRFLEAL
201: QQLGGSYVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTS RRPSSTAQSS AAAATQPTPQ FVVVGSCIWV PQQEYAAAAA AAAATNVASG SPNQVYAPTA
301: TLPSGLKPHL AKQSSRRSEG PRSGDTGGVN SDSDNPTMSS SSQTTSAGHP
101: CRPVALNATR TGGAFHPFEK EKQPEAELPA SSTTAPASSA LVGDSGDKAT SDTEVHDKDS KDITEKDTDK DKDKEGQSQP NRKPRRCWAP ELHRRFLEAL
201: QQLGGSYVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTS RRPSSTAQSS AAAATQPTPQ FVVVGSCIWV PQQEYAAAAA AAAATNVASG SPNQVYAPTA
301: TLPSGLKPHL AKQSSRRSEG PRSGDTGGVN SDSDNPTMSS SSQTTSAGHP
001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS
Arabidopsis Description
HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.