CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G13300.1	Thale cress	nucleus	86.82	88.08
CDY50179	Canola	nucleus	84.53	85.26
CDY21091	Canola	nucleus	82.23	82.95
CDY19382	Canola	nucleus	80.23	82.35
CDX97993	Canola	nucleus	81.09	82.03
CDY04180	Canola	nucleus	57.31	59.35
CDY13584	Canola	nucleus	60.17	58.82
CDX83554	Canola	nucleus	59.31	58.47
CDY39188	Canola	nucleus	57.88	58.05
VIT_01s0011g03110.t01	Wine grape	nucleus	46.42	45.51
CDX81535	Canola	nucleus	44.41	45.19
CDY51129	Canola	nucleus	40.69	44.38
CDY20522	Canola	nucleus	41.83	44.24
PGSC0003DMT400002162	Potato	nucleus	46.99	43.62
CDX95998	Canola	nucleus	43.84	42.62
CDY54503	Canola	nucleus	44.7	42.39
CDY38609	Canola	nucleus	42.98	41.55
Solyc05g009720.2.1	Tomato	nucleus	46.99	41.0
GSMUA_Achr1P23220_001	Banana	nucleus	28.08	36.98
GSMUA_Achr11P...	Banana	nucleus	38.68	36.59
GSMUA_Achr6P09870_001	Banana	nucleus	35.53	36.47
GSMUA_Achr8P18270_001	Banana	nucleus	38.68	36.39
GSMUA_Achr10P...	Banana	nucleus	32.09	36.13
GSMUA_Achr3P21090_001	Banana	nucleus	37.25	34.85
TraesCS2D01G119100.1	Wheat	nucleus	38.11	33.08
Os02t0325600-01	Rice	nucleus	38.97	33.01
CDY59732	Canola	nucleus	23.5	32.03
CDY40421	Canola	nucleus	14.61	31.29
GSMUA_Achr4P03680_001	Banana	nucleus	26.93	30.52
CDX69259	Canola	nucleus	28.08	30.43
TraesCS2B01G135600.1	Wheat	nucleus	30.09	30.0
CDX75610	Canola	nucleus	27.79	29.85
CDY44057	Canola	nucleus	27.22	29.59
EES15678	Sorghum	nucleus	38.97	29.44
CDY72117	Canola	nucleus	15.19	28.96
Zm00001d023411_P001	Maize	nucleus	37.54	28.92
Zm00001d023402_P001	Maize	nucleus	37.25	28.32
CDY51048	Canola	nucleus	24.07	27.91
CDY42715	Canola	nucleus	23.5	27.89
TraesCS2A01G116100.2	Wheat	plastid	37.54	27.58
GSMUA_Achr4P13650_001	Banana	plastid	12.32	26.06
HORVU2Hr1G020140.3	Barley	nucleus, plastid	38.11	25.73
CDX69206	Canola	nucleus	11.46	25.64
CDY71327	Canola	nucleus	24.07	25.15
CDY70722	Canola	nucleus	21.78	24.76
CDY51214	Canola	nucleus	29.23	24.11
CDY02988	Canola	nucleus	29.23	24.11
CDY71874	Canola	nucleus	24.36	23.55
CDY22459	Canola	nucleus	26.65	22.85
CDY29342	Canola	cytosol, mitochondrion, nucleus	10.6	18.32

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:A0A078FNR9	UniProt:A0A078FNR9	EnsemblPlants:CDY16075	ProteinID:CDY16075
ProteinID:CDY16075.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00090481001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31003	PANTHER:PTHR31003:SF16	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0004EE8022
SEG:seg	:	:	:	:	:

Description

BnaC08g40480DBnaC08g40480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNR9]

Coordinates

chrLK032060:+:505069..506615

Molecular Weight (calculated)

39801.7 Da

IEP (calculated)

6.381

GRAVY (calculated)

-0.969

Length

349 amino acids

Sequence
(BLAST)

001: MMKRLGNMDY NQKRERCGQY MEALEEERRK IHVFQRELPL CLDLVTQAIE ACKRELPEMA IDNLYGQSEC SEQTTGECRP VVLEQFLTIK DLSTSNEEEE
101: KDEEFDDEHG THDPDNDSED KNMKSDWLKS VQLWNQPDPL LPKEERLQPK MIETVVKIDE SMRKDLMVNG GGEGRRKEAD KDGGRKQRRC WSSQLHRRFL
201: NALQHLGGPH VATPKQIREF MKVDGLTNDE VKSHLQKYRL HTRRPSQTIP NNRNSQTQHF VVVGGLWGPQ SDYSTGKTTG GATNSSTTTT TGIYGAMAAP
301: PLPQWPSHSN FTQSIIVEEG SESHGEEVVV RCSSPAMSSS TRNHYVKKN

Best Arabidopsis Sequence Match ( AT1G13300.1 )
(BLAST)

001: MIKKFSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKRELPEMT TENMYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE
101: EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH
201: LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW
301: PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN

Arabidopsis Description

HRS1Transcription factor HRS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.