Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018794.1-P | Field mustard | nucleus | 98.34 | 98.01 |
| CDY71327 | Canola | nucleus | 90.37 | 81.44 |
| CDY59732 | Canola | nucleus | 56.15 | 66.02 |
| AT1G49560.1 | Thale cress | nucleus | 72.43 | 65.47 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 35.55 | 52.97 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 45.85 | 34.41 |
| KRG89233 | Soybean | nucleus | 39.53 | 32.34 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 36.21 | 32.15 |
| KXG37487 | Sorghum | nucleus | 36.21 | 31.87 |
| Solyc01g108300.2.1 | Tomato | nucleus | 42.86 | 31.85 |
| PGSC0003DMT400066352 | Potato | nucleus | 42.52 | 31.84 |
| KRH71185 | Soybean | nucleus | 43.19 | 31.4 |
| KRH49770 | Soybean | nucleus | 38.21 | 31.34 |
| Os03t0764600-01 | Rice | nucleus | 36.21 | 31.32 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 34.55 | 31.14 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 39.2 | 31.13 |
| Zm00001d034160_P001 | Maize | nucleus | 34.88 | 31.07 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 34.22 | 30.84 |
| KRH50234 | Soybean | nucleus | 41.86 | 30.58 |
| CDX69259 | Canola | nucleus | 32.56 | 30.43 |
| GSMUA_Achr10P... | Banana | nucleus | 39.2 | 30.41 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 34.55 | 30.14 |
| Zm00001d013202_P001 | Maize | nucleus | 36.21 | 30.11 |
| HORVU2Hr1G006350.1 | Barley | plastid | 13.29 | 29.85 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 34.88 | 29.58 |
| CDY40421 | Canola | nucleus | 15.95 | 29.45 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 36.88 | 29.29 |
| CDY44057 | Canola | nucleus | 31.23 | 29.28 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 35.55 | 29.23 |
| CDX75610 | Canola | nucleus | 31.56 | 29.23 |
| HORVU6Hr1G034270.1 | Barley | plastid | 12.96 | 29.1 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 32.23 | 29.04 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 34.22 | 28.93 |
| GSMUA_Achr10P... | Banana | nucleus | 37.54 | 28.9 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 30.9 | 28.88 |
| Os07t0119300-01 | Rice | nucleus | 33.89 | 28.73 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 37.21 | 28.57 |
| Os03t0241001-00 | Rice | plastid | 13.62 | 28.47 |
| Zm00001d018698_P001 | Maize | nucleus | 34.88 | 28.46 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 31.89 | 28.24 |
| CDY42715 | Canola | nucleus | 27.57 | 28.23 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 34.88 | 28.23 |
| CDY72117 | Canola | nucleus | 16.94 | 27.87 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 34.55 | 27.73 |
| CDX69206 | Canola | nucleus | 14.29 | 27.56 |
| Os12t0586300-00 | Rice | extracellular | 35.88 | 27.34 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 34.22 | 27.32 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 34.22 | 27.25 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 34.22 | 27.25 |
| EER95793 | Sorghum | nucleus | 35.22 | 26.97 |
| Zm00001d030891_P001 | Maize | nucleus | 32.56 | 26.78 |
| TraesCS5D01G411800.1 | Wheat | plastid | 34.22 | 26.14 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 34.55 | 25.87 |
| CDY04180 | Canola | nucleus | 28.24 | 25.22 |
| OQU79454 | Sorghum | nucleus | 33.55 | 24.82 |
| CDX81535 | Canola | nucleus | 28.24 | 24.78 |
| CDX97993 | Canola | nucleus | 28.24 | 24.64 |
| CDX83554 | Canola | nucleus | 28.9 | 24.58 |
| CDY21091 | Canola | nucleus | 28.24 | 24.57 |
| CDY50179 | Canola | nucleus | 28.24 | 24.57 |
| CDY19382 | Canola | nucleus | 27.57 | 24.41 |
| HORVU2Hr1G062670.3 | Barley | plastid | 34.88 | 24.25 |
| CDX95998 | Canola | nucleus | 28.9 | 24.23 |
| CDY16075 | Canola | nucleus | 27.91 | 24.07 |
| CDY39188 | Canola | nucleus | 27.57 | 23.85 |
| CDY13584 | Canola | nucleus | 28.24 | 23.81 |
| CDY51129 | Canola | nucleus | 25.25 | 23.75 |
| CDY54503 | Canola | nucleus | 28.9 | 23.64 |
| CDY38609 | Canola | nucleus | 28.24 | 23.55 |
| CDY20522 | Canola | nucleus | 25.58 | 23.33 |
| CDY02988 | Canola | nucleus | 31.89 | 22.7 |
| CDY22459 | Canola | nucleus | 30.56 | 22.6 |
| CDY51214 | Canola | nucleus | 31.56 | 22.46 |
| CDY70722 | Canola | nucleus | 22.59 | 22.15 |
| CDY71874 | Canola | nucleus | 25.25 | 21.05 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 29.57 | 19.52 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 2.33 | 11.11 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078IPQ5 | UniProt:A0A078IPQ5 | EnsemblPlants:CDY51048 | ProteinID:CDY51048 |
| ProteinID:CDY51048.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00098088001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 |
| PANTHER:PTHR31003:SF7 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE0A8E | SEG:seg |
Description
BnaA06g03110DBnaA06g03110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPQ5]
Coordinates
chrLK032960:-:84700..86129
Molecular Weight (calculated)
33522.8 Da
IEP (calculated)
6.266
GRAVY (calculated)
-0.718
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLGDELSL GSRRHCSIPT KPSKIMNVKK LEEEKIKIES SDLELPLCLQ ILNDAILYLK EENKRCSEMD TQPLLKDFIS PLLWREDNNK LDIERNEEKS
101: LSGLPMLLKT PEVETGLGLG LASSSMVNGG RRKGTASCGF NSNSVPQLPP YLQQQALSRK QRRCWTPELH RRFVDALQLL GGPGVATPKQ IREHMQEEGL
201: TNDEVKSHLQ KYRLHIRKSN SNLEKQSLVV LGFNLWNSSS KEEEEGTGEG GGSSKRSNSL SDSPQGPLHL PCTTTTTTTG GDSCMEDAED AKSESFQIWR
301: D
101: LSGLPMLLKT PEVETGLGLG LASSSMVNGG RRKGTASCGF NSNSVPQLPP YLQQQALSRK QRRCWTPELH RRFVDALQLL GGPGVATPKQ IREHMQEEGL
201: TNDEVKSHLQ KYRLHIRKSN SNLEKQSLVV LGFNLWNSSS KEEEEGTGEG GGSSKRSNSL SDSPQGPLHL PCTTTTTTTG GDSCMEDAED AKSESFQIWR
301: D
001: MGSLGDELSL GSIFGRGVSM NVVAVEKVDE HVKKLEEEKR KLESCQLELP LSLQILNDAI LYLKDKRCSE METQPLLKDF ISVNKPIQGE RGIELLKREE
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
Arabidopsis Description
HHO6Transcription factor HHO6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.