Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P34680_001 | Banana | nucleus | 64.71 | 66.75 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 53.45 | 62.57 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 62.66 | 62.5 |
| GSMUA_Achr10P... | Banana | nucleus | 60.61 | 61.08 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 49.62 | 57.23 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 54.22 | 56.99 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 49.87 | 53.28 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 43.73 | 53.11 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 46.8 | 48.28 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 40.66 | 46.76 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 40.41 | 44.38 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 40.15 | 44.23 |
| Zm00001d034160_P001 | Maize | nucleus | 38.11 | 44.08 |
| Os03t0764600-01 | Rice | nucleus | 39.13 | 43.97 |
| KXG37487 | Sorghum | nucleus | 37.85 | 43.27 |
| Os07t0119300-01 | Rice | nucleus | 38.87 | 42.82 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 37.6 | 42.61 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 36.06 | 42.22 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 35.55 | 41.62 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 39.9 | 41.6 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 39.9 | 41.27 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 39.64 | 41.11 |
| HORVU2Hr1G006350.1 | Barley | plastid | 14.07 | 41.04 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 39.64 | 41.01 |
| Os12t0586300-00 | Rice | extracellular | 41.18 | 40.76 |
| Zm00001d018698_P001 | Maize | nucleus | 37.85 | 40.11 |
| Zm00001d030891_P001 | Maize | nucleus | 37.34 | 39.89 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 40.92 | 39.8 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 39.13 | 39.64 |
| HORVU6Hr1G034270.1 | Barley | plastid | 13.55 | 39.55 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 40.41 | 39.4 |
| KRH28514 | Soybean | nucleus | 34.02 | 38.89 |
| Os03t0241001-00 | Rice | plastid | 14.07 | 38.19 |
| CDX75610 | Canola | nucleus | 31.71 | 38.15 |
| Zm00001d013202_P001 | Maize | nucleus | 35.29 | 38.12 |
| EER95793 | Sorghum | nucleus | 38.11 | 37.91 |
| Bra010581.1-P | Field mustard | nucleus | 30.18 | 37.82 |
| PGSC0003DMT400026096 | Potato | nucleus | 35.29 | 37.81 |
| CDX69259 | Canola | nucleus | 30.95 | 37.58 |
| CDY51048 | Canola | nucleus | 28.9 | 37.54 |
| CDY40421 | Canola | nucleus | 15.6 | 37.42 |
| Bra018794.1-P | Field mustard | nucleus | 28.9 | 37.42 |
| Bra011720.1-P | Field mustard | nucleus | 30.95 | 37.23 |
| CDY59732 | Canola | nucleus | 24.3 | 37.11 |
| CDY44057 | Canola | nucleus | 30.43 | 37.07 |
| KRH49770 | Soybean | nucleus | 34.53 | 36.78 |
| Bra017795.1-P | Field mustard | nucleus | 27.62 | 36.73 |
| CDY42715 | Canola | nucleus | 27.62 | 36.73 |
| KRG89233 | Soybean | nucleus | 34.53 | 36.68 |
| Bra040662.1-P | Field mustard | nucleus | 30.43 | 36.5 |
| HORVU2Hr1G062670.3 | Barley | plastid | 40.41 | 36.49 |
| KRH71185 | Soybean | nucleus | 38.62 | 36.47 |
| OQU79454 | Sorghum | nucleus | 37.85 | 36.36 |
| KRH76947 | Soybean | nucleus | 34.02 | 36.24 |
| Solyc02g090400.2.1 | Tomato | nucleus | 34.27 | 36.12 |
| KRH50234 | Soybean | nucleus | 37.85 | 35.92 |
| PGSC0003DMT400066352 | Potato | nucleus | 36.83 | 35.82 |
| TraesCS5D01G411800.1 | Wheat | plastid | 36.06 | 35.79 |
| Solyc01g108300.2.1 | Tomato | nucleus | 36.83 | 35.56 |
| CDY72117 | Canola | nucleus | 16.37 | 34.97 |
| KRH04674 | Soybean | nucleus | 32.23 | 34.52 |
| CDY71327 | Canola | nucleus | 29.41 | 34.43 |
| AT1G49560.1 | Thale cress | nucleus | 28.9 | 33.93 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 28.9 | 33.24 |
| AT4G37180.2 | Thale cress | nucleus | 30.69 | 33.06 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 21.74 | 32.08 |
| CDX69206 | Canola | nucleus | 12.53 | 31.41 |
| GSMUA_Achr10P... | Banana | nucleus | 24.81 | 31.29 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 13.04 | 30.91 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 23.02 | 29.22 |
| GSMUA_Achr6P05330_001 | Banana | nucleus | 31.2 | 28.91 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 27.37 | 28.84 |
| GSMUA_Achr11P... | Banana | nucleus | 26.6 | 28.18 |
| GSMUA_Achr10P... | Banana | nucleus | 28.64 | 28.07 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 26.6 | 27.88 |
| CDY22459 | Canola | nucleus | 28.9 | 27.76 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 30.69 | 26.32 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 13.55 | 26.24 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 3.84 | 23.81 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSMUA_Achr10G08270_001 | EnsemblPlants:GSMUA_Achr10P08270_001 | EnsemblPlants:GSMUA_Achr10T08270_001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M0RGF3 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF2 |
| InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0002967E85 | SEG:seg | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G08270_001]
Coordinates
chr10:-:18287440..18289148
Molecular Weight (calculated)
42710.8 Da
IEP (calculated)
6.274
GRAVY (calculated)
-0.401
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPSVAGIGL DLNLCAMTTV GGFLEEAVTA VESVDSKVAK LEESVRSLEE ERRKIEAFKR ELPLCMLLIT DVIEGLKKEL ERCRGERFAR ACEAHNPINS
101: KCGEEGGVKL ESESKNKTSW MSSAQLWTTV NNNKDDYSIT EERNAKAARR EEESLFSESK SRRPVGAFVP FKGMSPFVMN SKEEVKPRVM LPDLPLQSPA
201: VRNAFCPISA AAEDHSLSLS GSQGVGGAAA SALAMAGTCL SLQVQQQQPP RKARRCWSTE LHRRFVLALE QLGGAQVATP KQIRELMQVD GLTNDEVKSH
301: LQKYRLHARK MPNSSPIVDQ PVVVLRGLWV PPENYTTSPQ QSVSLSGSPQ SPLQLAGSNL AVSATAGDSC EEDGRSECCN WTWGEVSAEH I
101: KCGEEGGVKL ESESKNKTSW MSSAQLWTTV NNNKDDYSIT EERNAKAARR EEESLFSESK SRRPVGAFVP FKGMSPFVMN SKEEVKPRVM LPDLPLQSPA
201: VRNAFCPISA AAEDHSLSLS GSQGVGGAAA SALAMAGTCL SLQVQQQQPP RKARRCWSTE LHRRFVLALE QLGGAQVATP KQIRELMQVD GLTNDEVKSH
301: LQKYRLHARK MPNSSPIVDQ PVVVLRGLWV PPENYTTSPQ QSVSLSGSPQ SPLQLAGSNL AVSATAGDSC EEDGRSECCN WTWGEVSAEH I
001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEAIGAL KDEARKGLSL MASNGKFDDV
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
Arabidopsis Description
HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.