Factsheet for Bra040662.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29342	Canola	cytosol, mitochondrion, nucleus	56.44	91.09
Bra018794.1-P	Field mustard	nucleus	68.4	73.84
AT1G49560.1	Thale cress	nucleus	66.26	64.86
VIT_03s0063g01060.t01	Wine grape	nucleus	42.33	34.41
KRG89233	Soybean	nucleus	38.04	33.7
KRH49770	Soybean	nucleus	37.42	33.24
Zm00001d034160_P001	Maize	nucleus	34.36	33.14
KXG37487	Sorghum	nucleus	34.36	32.75
TraesCS5B01G406300.2	Wheat	nucleus	33.13	32.34
TraesCS5A01G401600.1	Wheat	nucleus	32.82	32.04
GSMUA_Achr6P34680_001	Banana	nucleus	37.12	31.93
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	32.52	31.74
KRH71185	Soybean	nucleus	40.18	31.64
GSMUA_Achr7P00660_001	Banana	nucleus	32.82	31.56
PGSC0003DMT400066352	Potato	nucleus	38.65	31.34
Os03t0764600-01	Rice	nucleus	33.44	31.32
GSMUA_Achr10P...	Banana	nucleus	37.12	31.19
Solyc01g108300.2.1	Tomato	nucleus	38.65	31.11
KRH50234	Soybean	nucleus	38.96	30.83
Zm00001d013202_P001	Maize	nucleus	34.05	30.66
Bra017795.1-P	Field mustard	nucleus	27.61	30.61
GSMUA_Achr10P...	Banana	nucleus	36.5	30.43
GSMUA_Achr6P00650_001	Banana	nucleus	35.28	30.34
Bra011720.1-P	Field mustard	nucleus	30.06	30.15
Zm00001d007962_P001	Maize	extracellular, nucleus	31.9	30.14
TraesCS2A01G264800.1	Wheat	nucleus	32.82	30.14
GSMUA_Achr2P13380_001	Banana	nucleus	33.74	30.05
HORVU2Hr1G006350.1	Barley	plastid	12.27	29.85
GSMUA_Achr9P26570_001	Banana	nucleus	35.89	29.85
GSMUA_Achr4P28210_001	Banana	nucleus	29.45	29.81
TraesCS2D01G259200.2	Wheat	nucleus	32.52	29.78
GSMUA_Achr4P32500_001	Banana	nucleus	30.98	29.71
GSMUA_Achr4P23210_001	Banana	nucleus	33.44	29.3
Os07t0119300-01	Rice	nucleus	31.9	29.3
Bra010581.1-P	Field mustard	nucleus	27.91	29.17
HORVU6Hr1G034270.1	Barley	plastid	11.96	29.1
TraesCS5D01G081000.1	Wheat	nucleus	33.13	28.8
Zm00001d018698_P001	Maize	nucleus	32.21	28.46
TraesCS5A01G068900.2	Wheat	nucleus	32.82	28.31
HORVU5Hr1G018220.2	Barley	nucleus	32.82	28.31
TraesCS5B01G075300.1	Wheat	nucleus	32.52	28.12
Os12t0586300-00	Rice	extracellular	33.74	27.85
Os03t0241001-00	Rice	plastid	11.96	27.08
EER95793	Sorghum	nucleus	32.52	26.97
TraesCS5D01G411800.1	Wheat	plastid	32.52	26.9
Bra025161.1-P	Field mustard	nucleus	30.98	26.72
TraesCS2B01G277300.1	Wheat	nucleus	32.82	26.62
Bra004330.1-P	Field mustard	nucleus	28.83	26.18
Bra017349.1-P	Field mustard	nucleus	28.53	25.98
Zm00001d030891_P001	Maize	nucleus	29.14	25.96
Bra038360.1-P	Field mustard	nucleus	28.22	25.0
Bra016734.1-P	Field mustard	nucleus	26.38	24.86
HORVU2Hr1G062670.3	Barley	plastid	32.82	24.71
OQU79454	Sorghum	nucleus	30.37	24.32
Bra025115.1-P	Field mustard	nucleus	31.29	24.11
Bra012471.1-P	Field mustard	nucleus	24.23	24.01
Bra019824.1-P	Field mustard	nucleus	25.77	23.01
Bra026548.1-P	Field mustard	nucleus	29.14	22.51
HORVU5Hr1G097560.4	Barley	nucleus, plastid	28.53	20.39
HORVU4Hr1G032990.1	Barley	cytosol	2.15	11.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra040662	EnsemblPlants:Bra040662.1	EnsemblPlants:Bra040662.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4FHT4
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF7
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002547E8B	SEG:seg	:

Description

AT1G49560 (E=2e-057) | myb family transcription factor

Coordinates

chrA05:+:13125809..13127135

Molecular Weight (calculated)

36962.7 Da

IEP (calculated)

5.969

GRAVY (calculated)

-0.844

Length

326 amino acids

Sequence
(BLAST)

001: MGSLGDELSL GQRRHSSIPT TICRSKIMNV AVEQGCKLEE HVQKLEEEKR KIQGSELELP LCLQMLNDAI SYLKKETETD TQPLLKDFIS LSKPIREEHD
101: EELFKEKKFQ LWRENDRISN ARFSDTLEIE RDEEKSSNSL YMLLSPGMTT PKVETGLGLG LTSSSMVKGR RKLVASSSVP QPPPYLQQQS LRKQRRCWTP
201: ELHRLFVDAL QQLGGPGVAT PKQIREHMQE EGLTNDEVKS HLQKYRLHIR KSDSNLEKQS VVVLGFNLWN SSQEVEESGE GGETSKRNNS QSDSPQGPLQ
301: LPCTTTTTCG DSSMEDAEDA KSERRY

Best Arabidopsis Sequence Match ( AT1G49560.1 )
(BLAST)

001: MGSLGDELSL GSIFGRGVSM NVVAVEKVDE HVKKLEEEKR KLESCQLELP LSLQILNDAI LYLKDKRCSE METQPLLKDF ISVNKPIQGE RGIELLKREE
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP

Arabidopsis Description

HHO6Transcription factor HHO6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.