Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra001152.1-P | |
| Bra012818.1-P | |
| Bra025617.1-P | |
| Bra039431.1-P | |
| Bra040214.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54503 | Canola | nucleus | 98.37 | 98.37 |
| CDX81535 | Canola | nucleus | 90.22 | 96.79 |
| Bra004330.1-P | Field mustard | nucleus | 75.82 | 77.72 |
| AT1G68670.1 | Thale cress | nucleus | 74.46 | 77.4 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 53.8 | 55.62 |
| Bra012471.1-P | Field mustard | nucleus | 47.83 | 53.5 |
| PGSC0003DMT400002162 | Potato | nucleus | 49.18 | 48.14 |
| KRH70595 | Soybean | nucleus | 47.28 | 46.9 |
| KRH75476 | Soybean | nucleus | 48.1 | 46.7 |
| GSMUA_Achr10P... | Banana | nucleus | 38.59 | 45.81 |
| Solyc05g009720.2.1 | Tomato | nucleus | 49.73 | 45.75 |
| Bra016734.1-P | Field mustard | nucleus | 42.66 | 45.38 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 41.03 | 44.41 |
| Bra025161.1-P | Field mustard | nucleus | 45.11 | 43.92 |
| KRH34759 | Soybean | nucleus | 45.65 | 43.86 |
| KRG92028 | Soybean | nucleus | 45.11 | 43.57 |
| Bra017349.1-P | Field mustard | nucleus | 42.12 | 43.3 |
| Bra019824.1-P | Field mustard | nucleus | 42.66 | 43.01 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 43.48 | 42.9 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 42.66 | 42.32 |
| GSMUA_Achr11P... | Banana | nucleus | 41.85 | 41.73 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 28.53 | 39.62 |
| Os02t0325600-01 | Rice | nucleus | 42.39 | 37.86 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 38.59 | 35.32 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 32.88 | 34.57 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 28.26 | 33.77 |
| EES15678 | Sorghum | nucleus | 40.49 | 32.25 |
| Zm00001d023411_P001 | Maize | nucleus | 39.13 | 31.79 |
| Zm00001d023402_P001 | Maize | nucleus | 38.86 | 31.15 |
| Bra010581.1-P | Field mustard | nucleus | 26.09 | 30.77 |
| Bra017795.1-P | Field mustard | nucleus | 24.18 | 30.27 |
| TraesCS2A01G116100.2 | Wheat | plastid | 38.04 | 29.47 |
| Bra011720.1-P | Field mustard | nucleus | 25.54 | 28.92 |
| Bra018794.1-P | Field mustard | nucleus | 23.37 | 28.48 |
| Bra040662.1-P | Field mustard | nucleus | 25.0 | 28.22 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 39.4 | 28.05 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.23 | 27.27 |
| Bra025115.1-P | Field mustard | nucleus | 29.89 | 26.0 |
| Bra026548.1-P | Field mustard | nucleus | 29.08 | 25.36 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EnsemblPlantsGene:Bra038360 | EnsemblPlants:Bra038360.1 | EnsemblPlants:Bra038360.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M4FB94 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF4 |
| InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0002546496 | SEG:seg | : |
Description
AT1G68670 (E=9e-083) | myb family transcription factor
Coordinates
chrA02:+:10988255..10989665
Molecular Weight (calculated)
40517.3 Da
IEP (calculated)
8.219
GRAVY (calculated)
-0.847
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MENDYAQKMQ RCHEYVEALK EEQKKIQVFQ RELPLCLELV TQAIEACRKE LSSTSTTSEQ CSEQTTSVSG GPVLEEFIPT KKIEENGEHE SPTPEEIGNN
101: VDKKKSDWLR SVQLWNPSPD TNEVSNPERV VGKKAKVVEV KPNNYNNCGG FQPFQREKKR ETDLQPAAVR AVALAPAVKV VASAPATTTS STTETCGVGR
201: EGEEHVLQQQ SQSQTRRKQR RCWSPELHRR FLHALQQLGG SHVATPKQIR DHMKVDGLTN DEVKSHLQKY RLHTRRPATT VTAQGNGNSQ QPQFVVVGGI
301: WVPSPQDVPP PSDVANNGGG AYAPVTLQPP PQSLPPQSPK RSVERSSGQC NSQAASSSTN TTTSSPVS
101: VDKKKSDWLR SVQLWNPSPD TNEVSNPERV VGKKAKVVEV KPNNYNNCGG FQPFQREKKR ETDLQPAAVR AVALAPAVKV VASAPATTTS STTETCGVGR
201: EGEEHVLQQQ SQSQTRRKQR RCWSPELHRR FLHALQQLGG SHVATPKQIR DHMKVDGLTN DEVKSHLQKY RLHTRRPATT VTAQGNGNSQ QPQFVVVGGI
301: WVPSPQDVPP PSDVANNGGG AYAPVTLQPP PQSLPPQSPK RSVERSSGQC NSQAASSSTN TTTSSPVS
001: MMVEMDYAKK MQKCHEYVEA LEEEQKKIQV FQRELPLCLE LVTQAIEACR KELSGTTTTT SEQCSEQTTS VCGGPVFEEF IPIKKISSLC EEVQEEEEED
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS
Arabidopsis Description
HHO2Transcription factor HHO2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.