Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51048 | Canola | nucleus | 98.01 | 98.34 |
| Bra040662.1-P | Field mustard | nucleus | 73.84 | 68.4 |
| AT1G49560.1 | Thale cress | nucleus | 71.85 | 65.17 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 45.7 | 34.41 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 36.09 | 32.15 |
| KRG89233 | Soybean | nucleus | 39.07 | 32.07 |
| KXG37487 | Sorghum | nucleus | 36.09 | 31.87 |
| Solyc01g108300.2.1 | Tomato | nucleus | 42.72 | 31.85 |
| PGSC0003DMT400066352 | Potato | nucleus | 42.38 | 31.84 |
| Os03t0764600-01 | Rice | nucleus | 36.42 | 31.61 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 34.77 | 31.44 |
| KRH71185 | Soybean | nucleus | 43.05 | 31.4 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 34.44 | 31.14 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 39.07 | 31.13 |
| Zm00001d034160_P001 | Maize | nucleus | 34.77 | 31.07 |
| KRH49770 | Soybean | nucleus | 37.75 | 31.06 |
| KRH50234 | Soybean | nucleus | 42.05 | 30.83 |
| GSMUA_Achr10P... | Banana | nucleus | 39.07 | 30.41 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 34.44 | 30.14 |
| Zm00001d013202_P001 | Maize | nucleus | 36.09 | 30.11 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 35.1 | 29.86 |
| HORVU2Hr1G006350.1 | Barley | plastid | 13.24 | 29.85 |
| Bra010581.1-P | Field mustard | nucleus | 30.46 | 29.49 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 36.76 | 29.29 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 35.43 | 29.23 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 34.44 | 29.21 |
| HORVU6Hr1G034270.1 | Barley | plastid | 12.91 | 29.1 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 32.12 | 29.04 |
| Os07t0119300-01 | Rice | nucleus | 34.11 | 29.01 |
| Bra011720.1-P | Field mustard | nucleus | 31.13 | 28.92 |
| GSMUA_Achr10P... | Banana | nucleus | 37.42 | 28.9 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 30.79 | 28.88 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 37.09 | 28.57 |
| Bra017795.1-P | Field mustard | nucleus | 27.81 | 28.57 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 35.1 | 28.49 |
| Os03t0241001-00 | Rice | plastid | 13.58 | 28.47 |
| Zm00001d018698_P001 | Maize | nucleus | 34.77 | 28.46 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 31.79 | 28.24 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 34.44 | 27.73 |
| Os12t0586300-00 | Rice | extracellular | 35.76 | 27.34 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 34.11 | 27.32 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 34.11 | 27.25 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 34.11 | 27.25 |
| EER95793 | Sorghum | nucleus | 35.1 | 26.97 |
| Zm00001d030891_P001 | Maize | nucleus | 32.45 | 26.78 |
| TraesCS5D01G411800.1 | Wheat | plastid | 34.44 | 26.4 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 34.77 | 26.12 |
| OQU79454 | Sorghum | nucleus | 33.44 | 24.82 |
| Bra016734.1-P | Field mustard | nucleus | 28.15 | 24.57 |
| HORVU2Hr1G062670.3 | Barley | plastid | 35.1 | 24.48 |
| Bra017349.1-P | Field mustard | nucleus | 28.48 | 24.02 |
| Bra004330.1-P | Field mustard | nucleus | 28.48 | 23.96 |
| Bra025161.1-P | Field mustard | nucleus | 29.47 | 23.55 |
| Bra038360.1-P | Field mustard | nucleus | 28.48 | 23.37 |
| Bra025115.1-P | Field mustard | nucleus | 32.12 | 22.93 |
| Bra019824.1-P | Field mustard | nucleus | 26.82 | 22.19 |
| Bra012471.1-P | Field mustard | nucleus | 23.84 | 21.88 |
| Bra026548.1-P | Field mustard | nucleus | 30.13 | 21.56 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 29.8 | 19.74 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 2.32 | 11.11 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EnsemblPlantsGene:Bra018794 | EnsemblPlants:Bra018794.1 | EnsemblPlants:Bra018794.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M4DQK1 | InterPro:Myb_dom |
| InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF7 | InterPro:SANT/Myb |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI000253EBDA | SEG:seg | : | : |
Description
AT1G49560 (E=2e-062) | myb family transcription factor
Coordinates
chrA06:-:1918929..1920158
Molecular Weight (calculated)
33608.7 Da
IEP (calculated)
5.495
GRAVY (calculated)
-0.727
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLGDELSL GSRSHCSIPT KPSRITNVKK LEEEKIKIES SDLELPLCLQ ILNDAILYLK EENKRCSEMD TQPLLKDFIS PLLWREDNNK LDDIERNEEK
101: SLSGLPMLLK TPEVETGLGL GLASSSMVNG GRRKGTASCG FNSNSVPQLP PYLQQQALSR KQRRCWTPEL HRRFVDALQL LGGPGVATPK QIREHMQEEG
201: LTNDEVKSHL QKYRLHIRKS NSNLEKQSLV VLGFNLWNSS SKEEEEGAGE GGESSKRSNS LSDSPQGPLH LPCTTTTTTT GGDSCMEDAE DAKSESFQIW
301: RD
101: SLSGLPMLLK TPEVETGLGL GLASSSMVNG GRRKGTASCG FNSNSVPQLP PYLQQQALSR KQRRCWTPEL HRRFVDALQL LGGPGVATPK QIREHMQEEG
201: LTNDEVKSHL QKYRLHIRKS NSNLEKQSLV VLGFNLWNSS SKEEEEGAGE GGESSKRSNS LSDSPQGPLH LPCTTTTTTT GGDSCMEDAE DAKSESFQIW
301: RD
001: MGSLGDELSL GSIFGRGVSM NVVAVEKVDE HVKKLEEEKR KLESCQLELP LSLQILNDAI LYLKDKRCSE METQPLLKDF ISVNKPIQGE RGIELLKREE
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
Arabidopsis Description
HHO6Transcription factor HHO6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.