Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13584 | Canola | nucleus | 91.01 | 96.36 |
| CDX83554 | Canola | nucleus | 88.36 | 94.35 |
| Bra017349.1-P | Field mustard | nucleus | 74.07 | 78.21 |
| AT3G25790.1 | Thale cress | nucleus | 72.49 | 76.75 |
| Bra016734.1-P | Field mustard | nucleus | 55.82 | 60.98 |
| Bra019824.1-P | Field mustard | nucleus | 55.29 | 57.26 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 46.03 | 48.88 |
| PGSC0003DMT400002162 | Potato | nucleus | 46.83 | 47.07 |
| Bra004330.1-P | Field mustard | nucleus | 42.86 | 45.13 |
| Bra038360.1-P | Field mustard | nucleus | 43.92 | 45.11 |
| Solyc05g009720.2.1 | Tomato | nucleus | 47.35 | 44.75 |
| Bra012471.1-P | Field mustard | nucleus | 38.1 | 43.77 |
| GSMUA_Achr11P... | Banana | nucleus | 39.95 | 40.92 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 35.45 | 39.41 |
| GSMUA_Achr10P... | Banana | nucleus | 32.28 | 39.35 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 37.3 | 37.8 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 37.04 | 37.74 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 25.93 | 36.98 |
| Os02t0325600-01 | Rice | nucleus | 39.42 | 36.16 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 38.1 | 35.82 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 31.48 | 34.0 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 26.45 | 32.47 |
| Bra040662.1-P | Field mustard | nucleus | 26.72 | 30.98 |
| EES15678 | Sorghum | nucleus | 37.57 | 30.74 |
| Bra017795.1-P | Field mustard | nucleus | 23.55 | 30.27 |
| TraesCS2A01G116100.2 | Wheat | plastid | 37.57 | 29.89 |
| Bra010581.1-P | Field mustard | nucleus | 24.6 | 29.81 |
| Bra011720.1-P | Field mustard | nucleus | 25.4 | 29.54 |
| Bra018794.1-P | Field mustard | nucleus | 23.55 | 29.47 |
| Zm00001d023402_P001 | Maize | nucleus | 35.71 | 29.41 |
| Zm00001d023411_P001 | Maize | nucleus | 35.19 | 29.36 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 38.1 | 27.85 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 11.9 | 27.27 |
| Bra025115.1-P | Field mustard | nucleus | 28.31 | 25.3 |
| Bra026548.1-P | Field mustard | nucleus | 27.51 | 24.64 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EnsemblPlantsGene:Bra025161 | EnsemblPlants:Bra025161.1 | EnsemblPlants:Bra025161.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M4E8Q5 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF16 |
| InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI000253F77D | SEG:seg | : |
Description
AT3G25790 (E=9e-070) | myb family transcription factor
Coordinates
chrA06:-:23051568..23053719
Molecular Weight (calculated)
42277.1 Da
IEP (calculated)
5.827
GRAVY (calculated)
-0.902
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKSLSNMKN YNEKREKCCE YIEALEEERR KINVFQRELP LCLELVTQAI EAYKKEISGT TTDTLYGQPE CSEQTTGECG PVLDLFLPIK QSSASTDEEE
101: EEEEVDDVEH ESHDTGIDFV DKNMKSEWLK SVQLWNQPEA VPVSKSERSQ QETQTLVEPI KENDNGAGSH QPPCYESNEK NDYIISLATT SSGSGRQQTE
201: AERDGSGGSG GSSSRRGQRK QRRCWSHELH IRFLNALKQL GGPHVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRPS QTIPNNRDSQ TQHFVVVGGI
301: WVPQASHSKA NAVASRETTT GIYGPMASPL PSEWPSHSNF GGEISEEISR CSDKGIVRCS SPAMSSSTRT KTKDAKMS
101: EEEEVDDVEH ESHDTGIDFV DKNMKSEWLK SVQLWNQPEA VPVSKSERSQ QETQTLVEPI KENDNGAGSH QPPCYESNEK NDYIISLATT SSGSGRQQTE
201: AERDGSGGSG GSSSRRGQRK QRRCWSHELH IRFLNALKQL GGPHVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRPS QTIPNNRDSQ TQHFVVVGGI
301: WVPQASHSKA NAVASRETTT GIYGPMASPL PSEWPSHSNF GGEISEEISR CSDKGIVRCS SPAMSSSTRT KTKDAKMS
001: MIKNLSNMKN DNQKREKCCE YIEALEEERR KINVFQRELP LCVELVTQAI EAYKREISGT STDNLYGQSE CSEQTTGECG RILDLFIPIK HSSTSIEEEV
101: DDKDDDDEEH QSHETDIDFD DKNMKSEWLK SVQLWNQSDA VVSNNRQDRS QEKTETLVEL IKINDEAAKK NNNIKSPVTT SDGGSGGGGG RRGQRKNRRC
201: WSQELHRRFL NALKQLGGPH VATPKQIRDI MKVDGLTNDE VKSHLQKYRL HARRPSQTTP NNRNSQTQHF VVVGGIWVPQ TNHSTANAVN AVASGETTGI
301: YGPMVSSLPS EWPRHSNFGR KISEDRSRCS NNGFFRCSSP AMSCSTRTKT KDAKIIS
101: DDKDDDDEEH QSHETDIDFD DKNMKSEWLK SVQLWNQSDA VVSNNRQDRS QEKTETLVEL IKINDEAAKK NNNIKSPVTT SDGGSGGGGG RRGQRKNRRC
201: WSQELHRRFL NALKQLGGPH VATPKQIRDI MKVDGLTNDE VKSHLQKYRL HARRPSQTTP NNRNSQTQHF VVVGGIWVPQ TNHSTANAVN AVASGETTGI
301: YGPMVSSLPS EWPRHSNFGR KISEDRSRCS NNGFFRCSSP AMSCSTRTKT KDAKIIS
Arabidopsis Description
HHO1Transcription factor HHO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS00]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.