Factsheet for GSMUA_Achr4P03680_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr3P18200_001
GSMUA_Achr4P27190_001
GSMUA_Achr5P04520_001
GSMUA_Achr6P25560_001
GSMUA_Achr8P29370_001
GSMUA_Achr9P08680_001
GSMUA_Achr9P13230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088
AT1G68670.1	GSMUA_Achr8P29370_001	AT1G22630.1	21798944
AT1G68670.1	GSMUA_Achr3P18200_001	AT2G04630.1	21798944
AT1G68670.1	GSMUA_Achr4P27190_001	AT2G04630.1	21798944
AT1G68670.1	GSMUA_Achr5P04520_001	AT3G05530.1	21798944
AT1G68670.1	GSMUA_Achr9P13230_001	AT3G05530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P23220_001	Banana	nucleus	45.45	52.83
GSMUA_Achr10P...	Banana	nucleus	34.09	33.87
VIT_01s0011g03110.t01	Wine grape	nucleus	37.01	32.02
GSMUA_Achr6P09870_001	Banana	nucleus	35.06	31.76
CDY20522	Canola	nucleus	33.44	31.21
CDY51129	Canola	nucleus	32.14	30.94
Bra004330.1-P	Field mustard	nucleus	36.04	30.92
CDX95998	Canola	nucleus	35.71	30.64
AT1G25550.1	Thale cress	nucleus	34.09	30.52
GSMUA_Achr8P18270_001	Banana	nucleus	36.69	30.46
PGSC0003DMT400002162	Potato	nucleus	37.01	30.32
CDY38609	Canola	nucleus	35.39	30.19
CDX81535	Canola	nucleus	33.12	29.74
GSMUA_Achr4P13650_001	Banana	plastid	15.91	29.7
GSMUA_Achr11P...	Banana	nucleus	35.39	29.54
Bra012471.1-P	Field mustard	nucleus	31.17	29.18
CDY04180	Canola	nucleus	31.82	29.08
AT1G68670.1	Thale cress	nucleus	33.12	28.81
Bra038360.1-P	Field mustard	nucleus	33.77	28.26
Solyc05g009720.2.1	Tomato	nucleus	36.69	28.25
CDY39188	Canola	nucleus	31.82	28.16
GSMUA_Achr3P21090_001	Banana	nucleus	34.09	28.15
CDX83554	Canola	nucleus	32.14	27.97
CDY13584	Canola	nucleus	32.14	27.73
CDY54503	Canola	nucleus	33.12	27.72
CDY19382	Canola	nucleus	30.52	27.65
AT3G25790.1	Thale cress	nucleus	31.82	27.45
GSMUA_Achr7P00660_001	Banana	nucleus	30.19	27.43
Bra017349.1-P	Field mustard	nucleus	31.82	27.37
CDY50179	Canola	nucleus	30.52	27.17
CDX97993	Canola	nucleus	30.19	26.96
CDY16075	Canola	nucleus	30.52	26.93
Bra016734.1-P	Field mustard	nucleus	30.19	26.88
CDY21091	Canola	nucleus	30.19	26.88
Bra025161.1-P	Field mustard	nucleus	32.47	26.45
AT1G13300.1	Thale cress	nucleus	29.55	26.45
GSMUA_Achr4P28210_001	Banana	nucleus	27.6	26.4
KRH70595	Soybean	nucleus	31.17	25.88
KRH75476	Soybean	nucleus	31.49	25.59
KRG92028	Soybean	nucleus	31.49	25.46
KRH34759	Soybean	nucleus	31.49	25.33
Bra019824.1-P	Field mustard	nucleus	29.87	25.21
GSMUA_Achr4P32500_001	Banana	nucleus	27.6	25.0
GSMUA_Achr2P13380_001	Banana	nucleus	29.55	24.86
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	26.95	24.85
GSMUA_Achr10P...	Banana	nucleus	30.52	24.23
GSMUA_Achr9P26570_001	Banana	nucleus	30.52	23.98
GSMUA_Achr4P23210_001	Banana	nucleus	28.25	23.39
GSMUA_Achr6P34680_001	Banana	nucleus	28.57	23.22
GSMUA_Achr10P...	Banana	nucleus	29.22	23.02
GSMUA_Achr10P...	Banana	nucleus	29.55	22.81
GSMUA_Achr6P00650_001	Banana	nucleus	26.95	21.9
GSMUA_Achr6P05330_001	Banana	nucleus	29.87	21.8

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G03680_001
EnsemblPlants:GSMUA_Achr4P03680_001	EnsemblPlants:GSMUA_Achr4T03680_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0SKT5	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF16	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000296F1FA	SEG:seg	:	:

Description

MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G03680_001]

Coordinates

chr4:-:2932259..2937244

Molecular Weight (calculated)

35054.9 Da

IEP (calculated)

7.974

GRAVY (calculated)

-0.684

Length

308 amino acids

Sequence
(BLAST)

001: MDRIEYARRF GELIVALDEE RRKMEAFHRE LPLCLHLINQ TIESYKQLMV SAETLSHELA VKEFIPLRPR SVSSEDDTIH HQEWIRSTQL VAQEQDPLPK
101: TVHPQKPIAI KAKMTWGDAQ YLDKEEEIAP SESLACQDTE VASGEEGNGD GGKKKKKKKE RSQPERKVKR YWSEELHKRF LHALEQLGGC HAATPKLIRK
201: LMKVDGLTND EVKSHLQKYR LHARRSCPVE EISTSSNIQF VVVRGIWIPT PDCAILTSTD AAAHAAPVIG VSETGRYADV SPLPSPLMIL DRSYQQTDKH
301: SKGRNPRE

Best Arabidopsis Sequence Match ( AT1G13300.1 )
(BLAST)

001: MIKKFSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKRELPEMT TENMYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE
101: EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH
201: LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW
301: PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN

Arabidopsis Description

HRS1Transcription factor HRS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.