Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97993 | Canola | nucleus | 97.06 | 95.65 |
| CDY50179 | Canola | nucleus | 81.76 | 80.35 |
| CDY16075 | Canola | nucleus | 82.35 | 80.23 |
| CDY21091 | Canola | nucleus | 80.59 | 79.19 |
| CDY04180 | Canola | nucleus | 57.35 | 57.86 |
| CDY13584 | Canola | nucleus | 60.59 | 57.7 |
| CDX83554 | Canola | nucleus | 59.41 | 57.06 |
| CDY39188 | Canola | nucleus | 57.65 | 56.32 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 50.88 | 48.6 |
| CDX81535 | Canola | nucleus | 45.59 | 45.19 |
| CDY51129 | Canola | nucleus | 41.18 | 43.75 |
| CDY20522 | Canola | nucleus | 42.35 | 43.64 |
| PGSC0003DMT400002162 | Potato | nucleus | 47.06 | 42.55 |
| CDY54503 | Canola | nucleus | 45.88 | 42.39 |
| CDX95998 | Canola | nucleus | 44.71 | 42.34 |
| CDY38609 | Canola | nucleus | 44.12 | 41.55 |
| Solyc05g009720.2.1 | Tomato | nucleus | 48.24 | 41.0 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 29.12 | 37.36 |
| GSMUA_Achr10P... | Banana | nucleus | 33.82 | 37.1 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 36.47 | 36.47 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 39.71 | 36.39 |
| GSMUA_Achr11P... | Banana | nucleus | 38.53 | 35.5 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 37.65 | 34.32 |
| Os02t0325600-01 | Rice | nucleus | 38.82 | 32.04 |
| CDY40421 | Canola | nucleus | 15.29 | 31.9 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 37.35 | 31.59 |
| CDY59732 | Canola | nucleus | 23.24 | 30.86 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 27.65 | 30.52 |
| CDY72117 | Canola | nucleus | 15.88 | 29.51 |
| CDY44057 | Canola | nucleus | 27.06 | 28.66 |
| CDX69259 | Canola | nucleus | 27.06 | 28.57 |
| EES15678 | Sorghum | nucleus | 38.82 | 28.57 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 29.12 | 28.29 |
| CDY42715 | Canola | nucleus | 24.41 | 28.23 |
| Zm00001d023411_P001 | Maize | nucleus | 37.35 | 28.04 |
| CDX75610 | Canola | nucleus | 26.76 | 28.0 |
| CDY51048 | Canola | nucleus | 24.41 | 27.57 |
| Zm00001d023402_P001 | Maize | nucleus | 37.06 | 27.45 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.94 | 26.67 |
| TraesCS2A01G116100.2 | Wheat | plastid | 36.47 | 26.11 |
| CDY70722 | Canola | nucleus | 23.24 | 25.73 |
| CDY71327 | Canola | nucleus | 24.71 | 25.15 |
| CDY51214 | Canola | nucleus | 30.59 | 24.59 |
| CDY02988 | Canola | nucleus | 30.59 | 24.59 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 37.35 | 24.56 |
| CDX69206 | Canola | nucleus | 11.18 | 24.36 |
| CDY71874 | Canola | nucleus | 25.29 | 23.82 |
| CDY22459 | Canola | nucleus | 26.47 | 22.11 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 10.29 | 17.33 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078G2Y2 | UniProt:A0A078G2Y2 | EnsemblPlants:CDY19382 | ProteinID:CDY19382 |
| ProteinID:CDY19382.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00008920001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31003 | PANTHER:PTHR31003:SF16 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE4E71 |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g08910DBnaC05g08910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2Y2]
Coordinates
chrLK032095:-:442652..444310
Molecular Weight (calculated)
38755.0 Da
IEP (calculated)
5.473
GRAVY (calculated)
-0.958
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYNQERCGQ YIEALEEERR KILVFQRELP LCLDLVTQAI ERCKKEITET ATDNVYGQSE CSEQTTGQCT PVLEQFLTIK DSSTFNEEEV EEEFEDEQGN
101: HDPENDSEDK IMKSDWLKSV QLWNQPDPLL PKEEQSQQMM ETVVKRDESM REDANAMANS GERRRRETER KQRRCWSSQL HRRFLNALQH LGGPHVATPK
201: QIRELMKVDG LTNDEVKSHL QKYRLHTRRP SQTVPNNGNS QKQHFVVVGG LWVPQSDYSS GKTTGRATTS GTTTTTTTTT TNGIYGAMAA PPPPQWPSHF
301: NFTPSIIVEE GSGSHSEEVV VRCSSPAMSS STRNYHVTKN
101: HDPENDSEDK IMKSDWLKSV QLWNQPDPLL PKEEQSQQMM ETVVKRDESM REDANAMANS GERRRRETER KQRRCWSSQL HRRFLNALQH LGGPHVATPK
201: QIRELMKVDG LTNDEVKSHL QKYRLHTRRP SQTVPNNGNS QKQHFVVVGG LWVPQSDYSS GKTTGRATTS GTTTTTTTTT TNGIYGAMAA PPPPQWPSHF
301: NFTPSIIVEE GSGSHSEEVV VRCSSPAMSS STRNYHVTKN
001: MIKKFSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKRELPEMT TENMYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE
101: EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH
201: LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW
301: PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN
101: EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH
201: LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW
301: PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN
Arabidopsis Description
HRS1Transcription factor HRS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX67]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.