Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72117 | Canola | nucleus | 88.96 | 79.23 |
| CDY42715 | Canola | nucleus | 69.94 | 38.78 |
| CDX75610 | Canola | nucleus | 63.8 | 32.0 |
| CDX69259 | Canola | nucleus | 62.58 | 31.68 |
| CDY44057 | Canola | nucleus | 61.35 | 31.15 |
| CDX69206 | Canola | nucleus | 27.61 | 28.85 |
| CDY22459 | Canola | nucleus | 58.28 | 23.34 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 40.49 | 19.47 |
| PGSC0003DMT400026096 | Potato | nucleus | 43.56 | 19.45 |
| Solyc02g090400.2.1 | Tomato | nucleus | 43.56 | 19.14 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 36.81 | 18.63 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 37.42 | 18.26 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 41.1 | 18.01 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 42.94 | 17.86 |
| Os03t0241001-00 | Rice | plastid | 15.34 | 17.36 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 41.1 | 17.36 |
| KRH28514 | Soybean | nucleus | 36.2 | 17.25 |
| CDY59732 | Canola | nucleus | 26.99 | 17.19 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 39.88 | 17.15 |
| CDY51129 | Canola | nucleus | 33.13 | 16.88 |
| Zm00001d034160_P001 | Maize | nucleus | 34.97 | 16.86 |
| CDY20522 | Canola | nucleus | 33.74 | 16.67 |
| Os07t0119300-01 | Rice | nucleus | 36.2 | 16.62 |
| GSMUA_Achr10P... | Banana | nucleus | 39.26 | 16.49 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 34.36 | 16.47 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 36.81 | 16.39 |
| Os03t0764600-01 | Rice | nucleus | 34.97 | 16.38 |
| KXG37487 | Sorghum | nucleus | 34.36 | 16.37 |
| KRH76947 | Soybean | nucleus | 36.81 | 16.35 |
| CDY70722 | Canola | nucleus | 30.67 | 16.29 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 37.42 | 16.27 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 33.13 | 16.17 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 37.42 | 16.14 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 37.42 | 16.14 |
| CDY51048 | Canola | nucleus | 29.45 | 15.95 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 33.74 | 15.94 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 34.36 | 15.77 |
| CDY54503 | Canola | nucleus | 35.58 | 15.76 |
| CDX81535 | Canola | nucleus | 33.13 | 15.74 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 36.2 | 15.65 |
| KRH04674 | Soybean | nucleus | 34.97 | 15.62 |
| GSMUA_Achr10P... | Banana | nucleus | 37.42 | 15.6 |
| CDX95998 | Canola | nucleus | 34.36 | 15.6 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 31.9 | 15.57 |
| CDY71874 | Canola | nucleus | 34.36 | 15.51 |
| Zm00001d013202_P001 | Maize | nucleus | 34.36 | 15.47 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 33.74 | 15.45 |
| Zm00001d018698_P001 | Maize | nucleus | 34.97 | 15.45 |
| Zm00001d030891_P001 | Maize | nucleus | 34.36 | 15.3 |
| CDY19382 | Canola | nucleus | 31.9 | 15.29 |
| CDY71327 | Canola | nucleus | 31.29 | 15.27 |
| CDY38609 | Canola | nucleus | 33.74 | 15.24 |
| CDX97993 | Canola | nucleus | 31.9 | 15.07 |
| CDY04180 | Canola | nucleus | 30.67 | 14.84 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 34.36 | 14.78 |
| OQU79454 | Sorghum | nucleus | 36.81 | 14.74 |
| CDY50179 | Canola | nucleus | 31.29 | 14.74 |
| CDX83554 | Canola | nucleus | 31.9 | 14.69 |
| Os12t0586300-00 | Rice | extracellular | 35.58 | 14.68 |
| CDY16075 | Canola | nucleus | 31.29 | 14.61 |
| EER95793 | Sorghum | nucleus | 34.97 | 14.5 |
| CDY21091 | Canola | nucleus | 30.67 | 14.45 |
| CDY39188 | Canola | nucleus | 30.67 | 14.37 |
| CDY13584 | Canola | nucleus | 31.29 | 14.29 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 34.36 | 13.93 |
| CDY51214 | Canola | nucleus | 35.58 | 13.71 |
| CDY02988 | Canola | nucleus | 35.58 | 13.71 |
| TraesCS5D01G411800.1 | Wheat | plastid | 32.52 | 13.45 |
| HORVU2Hr1G062670.3 | Barley | plastid | 34.36 | 12.93 |
| HORVU2Hr1G006350.1 | Barley | plastid | 10.43 | 12.69 |
| HORVU6Hr1G034270.1 | Barley | plastid | 10.43 | 12.69 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 31.9 | 11.4 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 13.5 | 10.89 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 3.68 | 9.52 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | GO:A0A078HRT0 | UniProt:A0A078HRT0 | EnsemblPlants:CDY40421 | ProteinID:CDY40421 |
| ProteinID:CDY40421.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00069630001 | InterPro:Homeobox-like_sf |
| InterPro:Myb_dom_plants | PANTHER:PTHR31003 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EF34C8 | SEG:seg |
Description
BnaA04g20960DBnaA04g20960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRT0]
Coordinates
chrLK032470:+:60629..61746
Molecular Weight (calculated)
18546.8 Da
IEP (calculated)
8.491
GRAVY (calculated)
-0.711
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MIWFLCVAIE RLKQETSSVQ GVELETDNKK NWMSSAQLWI SNSNSQSQST NEEENRCVTQ TCNNNKANQR GAILSFNRPP PPLPSPPLSL PTSEILTDYS
101: SRIEQRSQVA TPKQIRDIMK VDGLTNDEVK SHLQKYRLHI RKSDSNLEKQ SVVVLGFNLW NSS
101: SRIEQRSQVA TPKQIRDIMK VDGLTNDEVK SHLQKYRLHI RKSDSNLEKQ SVVVLGFNLW NSS
001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEEIVFL CVAIGALKDE ARKGLSLMAS
101: NGKFDDVERA KPETDKKSWM SSAQLWISNP NSQFRSTNEE EEDRCVSQNP FQTCNYPNQG GVFMPFNRPP PPPPPAPLSL MTPTSEMMMD YSRIEQSHHH
201: HQFNKPSSQS HHIQKKEQRR RWSQELHRKF VDALHRLGGP QVATPKQIRD LMKVDGLTND EVKSHLQKYR MHIRKHPLHP TKTLSSSDQP GVLERESQSL
301: ISLSRSDSPQ SPLVARGLFS SNVGHSSEED EEEEDEEEEK SDGRSSCRND ETKKKRQVLD LEL
101: NGKFDDVERA KPETDKKSWM SSAQLWISNP NSQFRSTNEE EEDRCVSQNP FQTCNYPNQG GVFMPFNRPP PPPPPAPLSL MTPTSEMMMD YSRIEQSHHH
201: HQFNKPSSQS HHIQKKEQRR RWSQELHRKF VDALHRLGGP QVATPKQIRD LMKVDGLTND EVKSHLQKYR MHIRKHPLHP TKTLSSSDQP GVLERESQSL
301: ISLSRSDSPQ SPLVARGLFS SNVGHSSEED EEEEDEEEEK SDGRSSCRND ETKKKRQVLD LEL
Arabidopsis Description
HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.