CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28514	Soybean	nucleus	51.78	55.26
KRH76947	Soybean	nucleus	51.23	50.95
VIT_07s0197g00060.t01	Wine grape	nucleus	42.19	39.9
Bra017795.1-P	Field mustard	nucleus	30.41	37.76
CDY42715	Canola	nucleus	29.86	37.07
Bra010581.1-P	Field mustard	nucleus	30.96	36.22
GSMUA_Achr7P00660_001	Banana	nucleus	33.42	35.99
KRG89233	Soybean	nucleus	35.89	35.6
Solyc02g090400.2.1	Tomato	nucleus	36.16	35.58
CDY44057	Canola	nucleus	31.23	35.51
KRH49770	Soybean	nucleus	35.62	35.42
PGSC0003DMT400026096	Potato	nucleus	35.07	35.07
CDY40421	Canola	nucleus	15.62	34.97
KRH71185	Soybean	nucleus	39.18	34.54
GSMUA_Achr4P28210_001	Banana	nucleus	30.41	34.47
CDX69259	Canola	nucleus	30.14	34.16
KRH50234	Soybean	nucleus	38.36	33.98
Bra011720.1-P	Field mustard	nucleus	29.86	33.54
GSMUA_Achr9P26570_001	Banana	nucleus	35.89	33.42
KXG37487	Sorghum	nucleus	31.23	33.33
Os07t0119300-01	Rice	nucleus	32.33	33.24
CDX75610	Canola	nucleus	29.59	33.23
GSMUA_Achr2P13380_001	Banana	nucleus	33.15	33.06
GSMUA_Achr6P34680_001	Banana	nucleus	33.97	32.72
GSMUA_Achr4P23210_001	Banana	nucleus	33.15	32.53
GSMUA_Achr10P...	Banana	nucleus	34.52	32.47
Zm00001d007962_P001	Maize	extracellular, nucleus	30.68	32.46
GSMUA_Achr10P...	Banana	nucleus	34.52	32.23
GSMUA_Achr6P00650_001	Banana	nucleus	33.42	32.19
Os03t0764600-01	Rice	nucleus	30.68	32.18
TraesCS2A01G264800.1	Wheat	nucleus	31.23	32.11
Zm00001d034160_P001	Maize	nucleus	29.59	31.95
TraesCS2D01G259200.2	Wheat	nucleus	30.96	31.74
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	29.04	31.74
TraesCS5A01G401600.1	Wheat	nucleus	29.04	31.74
Os03t0241001-00	Rice	plastid	12.33	31.25
CDY72117	Canola	nucleus	15.62	31.15
TraesCS5B01G406300.2	Wheat	nucleus	28.49	31.14
HORVU6Hr1G034270.1	Barley	plastid	11.23	30.6
HORVU2Hr1G006350.1	Barley	plastid	11.23	30.6
GSMUA_Achr4P32500_001	Banana	nucleus	28.49	30.59
TraesCS5D01G081000.1	Wheat	nucleus	31.23	30.4
Zm00001d013202_P001	Maize	nucleus	30.14	30.39
HORVU5Hr1G018220.2	Barley	nucleus	31.23	30.16
Zm00001d030891_P001	Maize	nucleus	30.14	30.05
TraesCS5B01G075300.1	Wheat	nucleus	30.96	29.97
TraesCS5A01G068900.2	Wheat	nucleus	30.96	29.89
Zm00001d018698_P001	Maize	nucleus	29.86	29.54
AT4G37180.2	Thale cress	nucleus	29.32	29.48
EER95793	Sorghum	nucleus	31.23	29.01
Os12t0586300-00	Rice	extracellular	31.23	28.86
TraesCS2B01G277300.1	Wheat	nucleus	31.78	28.86
CDY22459	Canola	nucleus	30.96	27.76
OQU79454	Sorghum	nucleus	30.68	27.52
TraesCS5D01G411800.1	Wheat	plastid	29.04	26.9
HORVU2Hr1G062670.3	Barley	plastid	30.96	26.1
CDX69206	Canola	nucleus	10.96	25.64
KRH70595	Soybean	nucleus	25.75	25.34
KRH56661	Soybean	nucleus	30.96	24.89
KRH75476	Soybean	nucleus	25.21	24.27
KRG92028	Soybean	nucleus	25.21	24.15
KRH03776	Soybean	nucleus	29.86	24.11
KRH63037	Soybean	nucleus	30.41	24.03
KRH54846	Soybean	nucleus	30.68	23.98
KRH34759	Soybean	nucleus	24.93	23.76
HORVU5Hr1G097560.4	Barley	nucleus, plastid	25.75	20.61
HORVU4Hr1G032990.1	Barley	cytosol	1.92	11.11

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100794220	MapMan:15.5.2.3	UniProt:A0A0R0FMS0	EMBL:ACUP02010474	ncoils:Coil
EnsemblPlantsGene:GLYMA_17G178500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KRH04674	ProteinID:KRH04674	ProteinID:KRH04674.1	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF2	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	TMHMM:TMhelix	UniParc:UPI0006ED70E7	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:-:19324290..19328714

Molecular Weight (calculated)

40532.8 Da

IEP (calculated)

9.018

GRAVY (calculated)

-0.545

Length

365 amino acids

Sequence
(BLAST)

001: MEVSLDLSLA FVPRRTVCEI LGDIAKSKDG SRRMATIEDL VKRLEDEKKK IEAFKRELPL CMILVNDAIS KLKEEIKGGV RMKDEAVVEE LMKLMKTNSE
101: ANGSLMIVGN ESSDTKNWMN SVQLWNVETK QRNEEGDLFV PSNPIEQKND TNKSVSKTVM KDNKKMSQVP SLGLMSPAVL ELNHRKTESG YGHGSSMIIT
201: SSVEIKGHHQ SQQPQQNPRK QRRCWSPDLH RRFVDALQQL GGPQVATPKQ IRELMQVVGL TNDEVKSHLQ KYRLHFKRPQ GSSIGHANSG LCKMAQDKCG
301: DDKSGSPQGP LFLGGSGKGL SSSGRNSMDT EGDEESDCRN WKATTIVTFV IAISIVIITI TIVAT

Best Arabidopsis Sequence Match ( AT4G37180.1 )
(BLAST)

001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEAIGAL KDEARKGLSL MASNGKFDDV
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL

Arabidopsis Description

HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.