Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G03500.1 | KRG95394 | AT5G22355.1 | 21798944 |
| AT2G03500.1 | KRH67075 | AT5G22355.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH54846 | Soybean | nucleus | 87.01 | 86.08 |
| KRH03776 | Soybean | nucleus | 70.35 | 71.9 |
| KRH56661 | Soybean | nucleus | 70.13 | 71.37 |
| VIT_11s0016g04600.t01 | Wine grape | nucleus | 65.58 | 65.87 |
| Solyc12g006800.1.1 | Tomato | nucleus | 54.76 | 57.63 |
| PGSC0003DMT400078136 | Potato | nucleus | 54.11 | 56.18 |
| GSMUA_Achr6P05330_001 | Banana | nucleus | 51.08 | 55.92 |
| CDY02988 | Canola | nucleus | 48.27 | 52.72 |
| Bra026548.1-P | Field mustard | nucleus | 48.05 | 52.61 |
| CDY51214 | Canola | nucleus | 48.05 | 52.48 |
| Bra025115.1-P | Field mustard | nucleus | 47.84 | 52.25 |
| AT2G03500.1 | Thale cress | nucleus | 48.7 | 52.08 |
| CDY70722 | Canola | nucleus | 34.42 | 51.79 |
| GSMUA_Achr10P... | Banana | nucleus | 43.51 | 50.38 |
| CDY71874 | Canola | nucleus | 38.74 | 49.58 |
| TraesCS3B01G144100.1 | Wheat | nucleus | 43.07 | 42.16 |
| TraesCS3D01G125300.1 | Wheat | nucleus | 42.64 | 41.74 |
| TraesCS3A01G123700.1 | Wheat | nucleus | 42.42 | 41.53 |
| Os01t0176700-01 | Rice | nucleus | 41.56 | 40.25 |
| EES02372 | Sorghum | nucleus | 42.64 | 39.24 |
| HORVU3Hr1G022960.5 | Barley | nucleus | 42.42 | 37.62 |
| Zm00001d039637_P001 | Maize | nucleus | 41.77 | 36.01 |
| KRH71185 | Soybean | nucleus | 31.17 | 34.78 |
| KRH50234 | Soybean | nucleus | 30.74 | 34.47 |
| KRG89233 | Soybean | nucleus | 27.06 | 33.97 |
| KRH28514 | Soybean | nucleus | 25.11 | 33.92 |
| KRH34759 | Soybean | nucleus | 27.27 | 32.9 |
| KRH49770 | Soybean | nucleus | 25.97 | 32.7 |
| KRH70595 | Soybean | nucleus | 25.97 | 32.34 |
| KRH75476 | Soybean | nucleus | 26.19 | 31.93 |
| KRG92028 | Soybean | nucleus | 25.97 | 31.5 |
| KRH76947 | Soybean | nucleus | 24.68 | 31.06 |
| KRH04674 | Soybean | nucleus | 24.03 | 30.41 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100815048 | MapMan:15.5.2.3 | EMBL:ACUP02002581 | ncoils:Coil | EnsemblPlantsGene:GLYMA_04G151000 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | UniProt:I1JW88 | InterPro:IPR017930 |
| EnsemblPlants:KRH63037 | ProteinID:KRH63037 | ProteinID:KRH63037.1 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 |
| PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF3 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| UniParc:UPI00023393AD | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:33374872..33378024
Molecular Weight (calculated)
51008.5 Da
IEP (calculated)
7.447
GRAVY (calculated)
-0.854
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSQVELSMD YKPYSYSTLL KSYADETETD QTHKLEEFLS RLEEERVKID AFKRELPLCM QLLTNAVEAS RQQLQAFRSN QGTRPVREEF MPIKHPNSQE
101: STEKTSNISD KANWMTSAQL WSQASEGTKP QSTITSPKNG ADMGFSVSPN PALDNKHRNG GAFLPFSKER NSCQGLRDLP EVALASSEKE MEKKCELESE
201: KCSKRENSGK GSGSCEGVVD QGKSASVASE AQTTNTTITT TTNNTTGQTH RKARRCWSPD LHRRFVNALQ MLGGSQVATP KQIRELMKVD GLTNDEVKSH
301: LQKYRLHTRR PSPSLQTGAP TPQLVVFGGI WVPPEYARAA AHSGGPTLCG PHPTSHVPPP HYCAPTPMPQ EFYNSAPSLS LPSPAHENIL HHHHFHMYKT
401: APQTRSSPVS DVRSGGDRSE TIEDGKSESG SWKAENGEKK GLAALRDQEG DESTGSEITL KF
101: STEKTSNISD KANWMTSAQL WSQASEGTKP QSTITSPKNG ADMGFSVSPN PALDNKHRNG GAFLPFSKER NSCQGLRDLP EVALASSEKE MEKKCELESE
201: KCSKRENSGK GSGSCEGVVD QGKSASVASE AQTTNTTITT TTNNTTGQTH RKARRCWSPD LHRRFVNALQ MLGGSQVATP KQIRELMKVD GLTNDEVKSH
301: LQKYRLHTRR PSPSLQTGAP TPQLVVFGGI WVPPEYARAA AHSGGPTLCG PHPTSHVPPP HYCAPTPMPQ EFYNSAPSLS LPSPAHENIL HHHHFHMYKT
401: APQTRSSPVS DVRSGGDRSE TIEDGKSESG SWKAENGEKK GLAALRDQEG DESTGSEITL KF
001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
Arabidopsis Description
EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.