Factsheet for TraesCS3D01G125300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G123700.1	Wheat	nucleus	98.09	98.09
TraesCS3B01G144100.1	Wheat	nucleus	97.46	97.46
HORVU3Hr1G022960.5	Barley	nucleus	94.49	85.6
EES02372	Sorghum	nucleus	69.7	65.54
Os01t0176700-01	Rice	nucleus	65.25	64.57
Zm00001d039637_P001	Maize	nucleus	68.22	60.07
GSMUA_Achr6P05330_001	Banana	nucleus	47.88	53.55
GSMUA_Achr10P...	Banana	nucleus	41.1	48.62
KRH03776	Soybean	nucleus	44.92	46.9
VIT_11s0016g04600.t01	Wine grape	nucleus	45.55	46.74
KRH56661	Soybean	nucleus	44.92	46.7
KRH54846	Soybean	nucleus	43.22	43.68
KRH63037	Soybean	nucleus	41.74	42.64
PGSC0003DMT400078136	Potato	nucleus	40.04	42.47
Solyc12g006800.1.1	Tomato	nucleus	39.19	42.14
Bra026548.1-P	Field mustard	nucleus	37.5	41.94
CDY51214	Canola	nucleus	37.5	41.84
CDY02988	Canola	nucleus	37.29	41.61
Bra025115.1-P	Field mustard	nucleus	37.29	41.61
AT2G03500.1	Thale cress	nucleus	37.29	40.74
CDY71874	Canola	nucleus	30.72	40.17
CDY70722	Canola	nucleus	25.64	39.41
TraesCS2D01G119100.1	Wheat	nucleus	27.33	32.09
TraesCS2D01G259200.2	Wheat	nucleus	24.15	32.02
TraesCS5D01G081000.1	Wheat	nucleus	23.31	29.33
TraesCS5D01G411800.1	Wheat	plastid	23.09	27.66

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009266	GO:GO:0009628	GO:GO:0009719	GO:GO:0009740
GO:GO:0009791	GO:GO:0009987	GO:GO:0010452	GO:GO:0016043	GO:GO:0019538	GO:GO:0048579
GO:GO:1903507	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF3	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
EnsemblPlantsGene:TraesCS3D01G125300	EnsemblPlants:TraesCS3D01G125300.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:-:83861980..83863803

Molecular Weight (calculated)

50240.5 Da

IEP (calculated)

6.055

GRAVY (calculated)

-0.692

Length

472 amino acids

Sequence
(BLAST)

001: MDSSPSDLTL DYTPNGNGTA SAGGGYPKQA SPVVDHHHHL SAEQATTQKL QEFLARLDDE RLKIDAFKRE LPLCMQLLNQ AMEAYRQQLE ACQMGSHGGA
101: AARAPLVLEE FIPLKNIGID AAEKAAGNAP SEKANWMVSA QLWNGPAAGD AAAKGPQTPK ERSEHPLDTS PMLGALDGGG GNGVGAFLPF TKEKACMAES
201: AALPELGLAP AEKDREADRK PYHDDSGSNG TVVSRRDVGA PPTSTAPEGQ SVPPPPQTNR KARRCWSPEL HRRFVNALQI LGGAQVATPK QIRELMKVDG
301: LTNDEVKSHL QKYRLHTRRP MPAPSAPPPG APQLVVLGGI WMPPDYAAQG AGPAGIYGAH PATQAHYTAA VSAQEYYQNA AAAAHHGHHM QHHQAASMVH
401: HRAVAPPPPQ PAYKVHPVSA AGSQGSSEGR RSSGGGRERS ESIEEEGEER EDEEDEDEDG MAANGDAEQI NY

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.