Factsheet for PGSC0003DMT400078136

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006800.1.1	Tomato	nucleus	93.26	94.53
KRH56661	Soybean	nucleus	57.53	56.39
KRH03776	Soybean	nucleus	56.85	55.97
VIT_11s0016g04600.t01	Wine grape	nucleus	57.75	55.87
KRH63037	Soybean	nucleus	56.18	54.11
KRH54846	Soybean	nucleus	55.51	52.89
GSMUA_Achr6P05330_001	Banana	nucleus	47.64	50.24
Bra026548.1-P	Field mustard	nucleus	46.07	48.58
CDY02988	Canola	nucleus	46.07	48.46
Bra025115.1-P	Field mustard	nucleus	45.84	48.23
AT2G03500.1	Thale cress	nucleus	46.74	48.15
CDY51214	Canola	nucleus	45.62	47.99
GSMUA_Achr10P...	Banana	nucleus	42.02	46.87
CDY70722	Canola	nucleus	31.01	44.95
CDY71874	Canola	nucleus	36.18	44.6
Os01t0176700-01	Rice	nucleus	44.49	41.51
TraesCS3B01G144100.1	Wheat	nucleus	42.92	40.47
TraesCS3A01G123700.1	Wheat	nucleus	42.47	40.04
TraesCS3D01G125300.1	Wheat	nucleus	42.47	40.04
EES02372	Sorghum	nucleus	42.7	37.85
HORVU3Hr1G022960.5	Barley	nucleus	42.7	36.47
Zm00001d039637_P001	Maize	nucleus	42.47	35.26
PGSC0003DMT400066352	Potato	nucleus	31.24	34.58
PGSC0003DMT400002162	Potato	nucleus	28.54	33.78
PGSC0003DMT400026096	Potato	nucleus	26.97	32.88

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009266	GO:GO:0009628
GO:GO:0009719	GO:GO:0009740	GO:GO:0009791	GO:GO:0009987	GO:GO:0010452	GO:GO:0016043
GO:GO:0019538	GO:GO:0048579	GO:GO:1903507	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1CZG3
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400030389	PGSC:PGSC0003DMG400030389	EnsemblPlants:PGSC0003DMT400078136
PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF3	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI000294CBC5	SEG:seg	:	:	:	:

Description

Myb family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400030389]

Coordinates

chr12:+:5101581..5105593

Molecular Weight (calculated)

49538.5 Da

IEP (calculated)

7.360

GRAVY (calculated)

-0.900

Length

445 amino acids

Sequence
(BLAST)

001: MASSNSELSL ECKPHQSYSM LLKSFGEKNI DQTQNLEEFL TRLEEERVKI DAFKRELPLC MQLLTNAMEA SRQQLHSHRE SNHIGHMRPV LEEFIPLKNN
101: NASVELGAEK IVANNTSTIV DNKANWMTSA QLWSPPSDHQ ETKQQVQIST TCNKENDHHN MAFSVAPKLS LDNNNSSCPS PTTLALASSN KQNNNETLLQ
201: VEDNNNNNNN NKNLEIQQDS QGNGGGTNNT ITSTQQQQPH RKARRCWSPD LHRRFVNALQ MLGGSQVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR
301: PSPSPQATTA PPHLVVLGGI WVPPEYAAAA AHGGAPPTAT FYGPHSTSHA PSPHYIAAPQ AIAHEFYNTP QPLQSLHHLQ HHQQLYHPGS HVYKPQSKSH
401: SHSPESDARG TGQHGDRSSE SIEDGKSESY SSENGGERKV VVHKF

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.