Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G125300.1 | Wheat | nucleus | 64.57 | 65.25 |
| TraesCS3A01G123700.1 | Wheat | nucleus | 64.57 | 65.25 |
| TraesCS3B01G144100.1 | Wheat | nucleus | 63.94 | 64.62 |
| EES02372 | Sorghum | nucleus | 66.67 | 63.35 |
| HORVU3Hr1G022960.5 | Barley | nucleus | 65.41 | 59.88 |
| Zm00001d039637_P001 | Maize | nucleus | 63.94 | 56.9 |
| GSMUA_Achr6P05330_001 | Banana | nucleus | 44.65 | 50.47 |
| GSMUA_Achr10P... | Banana | nucleus | 38.16 | 45.61 |
| KRH03776 | Soybean | nucleus | 42.98 | 45.35 |
| VIT_11s0016g04600.t01 | Wine grape | nucleus | 43.61 | 45.22 |
| KRH56661 | Soybean | nucleus | 42.98 | 45.15 |
| PGSC0003DMT400078136 | Potato | nucleus | 41.51 | 44.49 |
| Solyc12g006800.1.1 | Tomato | nucleus | 40.04 | 43.51 |
| KRH54846 | Soybean | nucleus | 41.51 | 42.4 |
| KRH63037 | Soybean | nucleus | 40.25 | 41.56 |
| Bra026548.1-P | Field mustard | nucleus | 35.22 | 39.81 |
| CDY51214 | Canola | nucleus | 35.22 | 39.72 |
| CDY02988 | Canola | nucleus | 35.22 | 39.72 |
| Bra025115.1-P | Field mustard | nucleus | 35.22 | 39.72 |
| AT2G03500.1 | Thale cress | nucleus | 35.43 | 39.12 |
| CDY71874 | Canola | nucleus | 28.93 | 38.23 |
| CDY70722 | Canola | nucleus | 24.11 | 37.46 |
| Os03t0241001-00 | Rice | plastid | 10.48 | 34.72 |
| Os03t0764600-01 | Rice | nucleus | 23.27 | 31.9 |
| Os02t0325600-01 | Rice | nucleus | 26.21 | 30.34 |
| Os12t0586300-00 | Rice | extracellular | 24.32 | 29.37 |
| Os07t0119300-01 | Rice | nucleus | 21.59 | 29.01 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009266 |
| GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009740 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010452 |
| GO:GO:0016043 | GO:GO:0019538 | GO:GO:0048579 | GO:GO:1903507 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | EnsemblPlantsGene:Os01g0176700 | EnsemblPlants:Os01t0176700-01 | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31003 | PANTHER:PTHR31003:SF3 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0000DD89B7 |
| SEG:seg | : | : | : | : | : |
Description
Myb-like DNA-binding domain, SHAQKYF class domain containing protein. (Os01t0176700-01)
Coordinates
chr1:+:3953043..3955442
Molecular Weight (calculated)
50371.4 Da
IEP (calculated)
6.105
GRAVY (calculated)
-0.556
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: SSSSDLTLDD HHHLTAVAAA SGQATQKLQE FLSRLEEERL KIDAFKRELP LCMQLLNHAM EAYRQQLEAY QMGSQHSAAA AAAARAPLVL EEFIPVKNIG
101: IDVVAADKAA AAGGNSVSSE KASWMVSAQL WNAPASASAA DTAAKGPQTP KEHSEHHPLD TSPKLITAAA LPELALAPAE KAADAITIAA GEVDKKPYAH
201: DNGVVARSRE AQNGGKPPST PSDGQAVPPP PQPHRKARRC WSPELHRRFV NALQILGGAQ VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPMPSPA
301: PPTAATPQLV VLGGIWVPPE YATQAAGPAI YGAHPATQPH YTAAVAAQEY YHHHHHHLQH HPAAAALVHH RAVAPPPPLP PQQQLAPPYS AKSSASARLG
401: SPDSDGRGSG GGGGAAASGA GRDMSESIEE EGEGEEREDD DDDDEMAATN NAHAVDGDDD NDEINTTTTT SAGAINY
101: IDVVAADKAA AAGGNSVSSE KASWMVSAQL WNAPASASAA DTAAKGPQTP KEHSEHHPLD TSPKLITAAA LPELALAPAE KAADAITIAA GEVDKKPYAH
201: DNGVVARSRE AQNGGKPPST PSDGQAVPPP PQPHRKARRC WSPELHRRFV NALQILGGAQ VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPMPSPA
301: PPTAATPQLV VLGGIWVPPE YATQAAGPAI YGAHPATQPH YTAAVAAQEY YHHHHHHLQH HPAAAALVHH RAVAPPPPLP PQQQLAPPYS AKSSASARLG
401: SPDSDGRGSG GGGGAAASGA GRDMSESIEE EGEGEEREDD DDDDEMAATN NAHAVDGDDD NDEINTTTTT SAGAINY
001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
Arabidopsis Description
EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.