Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
28232208
|
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G075300.1 | Wheat | nucleus | 67.09 | 70.29 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 67.09 | 70.11 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 66.33 | 69.87 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 66.08 | 69.05 |
| Os03t0241001-00 | Rice | plastid | 23.8 | 65.28 |
| Zm00001d030891_P001 | Maize | nucleus | 57.72 | 62.3 |
| OQU79454 | Sorghum | nucleus | 61.01 | 59.21 |
| HORVU6Hr1G034270.1 | Barley | plastid | 20.0 | 58.96 |
| HORVU2Hr1G006350.1 | Barley | plastid | 20.0 | 58.96 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 9.37 | 58.73 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 38.48 | 44.84 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 41.52 | 44.09 |
| GSMUA_Achr10P... | Banana | nucleus | 42.03 | 42.78 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 40.76 | 42.48 |
| Os03t0764600-01 | Rice | nucleus | 37.22 | 42.24 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 35.44 | 41.92 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 33.67 | 41.3 |
| GSMUA_Achr10P... | Banana | nucleus | 40.76 | 41.18 |
| Os07t0119300-01 | Rice | nucleus | 36.96 | 41.13 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 40.0 | 40.31 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 37.22 | 40.16 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 36.71 | 38.26 |
| CDY51048 | Canola | nucleus | 27.34 | 35.88 |
| Bra018794.1-P | Field mustard | nucleus | 27.34 | 35.76 |
| KRH50234 | Soybean | nucleus | 37.22 | 35.68 |
| CDY40421 | Canola | nucleus | 14.68 | 35.58 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 34.18 | 34.97 |
| PGSC0003DMT400066352 | Potato | nucleus | 35.44 | 34.83 |
| PGSC0003DMT400026096 | Potato | nucleus | 32.15 | 34.79 |
| Solyc02g090400.2.1 | Tomato | nucleus | 32.66 | 34.77 |
| KRH71185 | Soybean | nucleus | 36.2 | 34.54 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 34.94 | 34.41 |
| Solyc01g108300.2.1 | Tomato | nucleus | 35.19 | 34.32 |
| KRG89233 | Soybean | nucleus | 31.9 | 34.24 |
| KRH28514 | Soybean | nucleus | 29.62 | 34.21 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 29.37 | 34.12 |
| KRH49770 | Soybean | nucleus | 31.39 | 33.79 |
| Bra040662.1-P | Field mustard | nucleus | 27.85 | 33.74 |
| CDY71327 | Canola | nucleus | 28.35 | 33.53 |
| CDY72117 | Canola | nucleus | 15.44 | 33.33 |
| CDX69259 | Canola | nucleus | 27.09 | 33.23 |
| AT1G49560.1 | Thale cress | nucleus | 27.85 | 33.03 |
| CDY59732 | Canola | nucleus | 21.01 | 32.42 |
| CDY42715 | Canola | nucleus | 23.8 | 31.97 |
| CDY44057 | Canola | nucleus | 25.57 | 31.46 |
| Bra010581.1-P | Field mustard | nucleus | 24.81 | 31.41 |
| Bra011720.1-P | Field mustard | nucleus | 25.82 | 31.38 |
| CDX75610 | Canola | nucleus | 25.82 | 31.38 |
| KRH76947 | Soybean | nucleus | 29.11 | 31.34 |
| Bra017795.1-P | Field mustard | nucleus | 23.29 | 31.29 |
| KRH04674 | Soybean | nucleus | 28.86 | 31.23 |
| CDX69206 | Canola | nucleus | 11.9 | 30.13 |
| AT4G37180.2 | Thale cress | nucleus | 27.59 | 30.03 |
| Os02t0325600-01 | Rice | nucleus | 27.09 | 25.97 |
| Os01t0176700-01 | Rice | nucleus | 29.37 | 24.32 |
| CDY22459 | Canola | nucleus | 24.3 | 23.59 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 10.38 | 20.3 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EntrezGene:4352661 | ProteinID:ABA99734.1 | ProteinID:BAF30175.1 | ProteinID:BAT17852.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| InterPro:Myb_dom_plants | EnsemblPlantsGene:Os12g0586300 | EnsemblPlants:Os12t0586300-00 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 |
| PANTHER:PTHR31003:SF2 | UniProt:Q2QMY1 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0000680D2B |
| RefSeq:XP_015618787.1 | SEG:seg | : | : | : | : |
Description
Myb-like DNA-binding domain, SHAQKYF class domain containing protein. (Os12t0586300-00)
Coordinates
chr12:+:24475101..24477611
Molecular Weight (calculated)
41465.4 Da
IEP (calculated)
8.243
GRAVY (calculated)
-0.453
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSSASAAQ HEEAAAAAAF VLGGVDMRML AARTATGALA RAGGGEAAAA AAAAARFEDC IRSLEAEKAK MEVFRRELPI SVHLIADVIE WLKDEVEKQR
101: LLRRRQVEAP AAAPPPEMFA PPATAKRKSA ASAAAEGVKA EADANDKRSW MSSAQLWSCG SHTSTSTSNG GSVKKQQHKV SNAFMPLATL PAFAKSLEKA
201: DAAVPDLSLS SRVAMADAPA CPAAPSATSS AVTDVAVAQR QQAVQRKARR CWSPELHRRF VAALQRLGGP QAATPKQIRE LMKVDGLTND EVKSHLQKYR
301: LHTRRASDGG DGGGDHQTVG GRLWPLPPEQ YTTSQHSTSQ SGSPQGPLQL TVSSSHAVSV TAGDSCDGGE EEEEDGKSGS YSWEMQNGAR ASSSS
101: LLRRRQVEAP AAAPPPEMFA PPATAKRKSA ASAAAEGVKA EADANDKRSW MSSAQLWSCG SHTSTSTSNG GSVKKQQHKV SNAFMPLATL PAFAKSLEKA
201: DAAVPDLSLS SRVAMADAPA CPAAPSATSS AVTDVAVAQR QQAVQRKARR CWSPELHRRF VAALQRLGGP QAATPKQIRE LMKVDGLTND EVKSHLQKYR
301: LHTRRASDGG DGGGDHQTVG GRLWPLPPEQ YTTSQHSTSQ SGSPQGPLQL TVSSSHAVSV TAGDSCDGGE EEEEDGKSGS YSWEMQNGAR ASSSS
001: MGSLGDELSL GSIFGRGVSM NVVAVEKVDE HVKKLEEEKR KLESCQLELP LSLQILNDAI LYLKDKRCSE METQPLLKDF ISVNKPIQGE RGIELLKREE
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
Arabidopsis Description
HHO6Transcription factor HHO6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.